Hb_000512_120

Information

Type transcription factor
Description TF Family: B3
Location Contig512: 135399-136628
Sequence    

Annotation

kegg
ID pop:POPTR_0001s45650g
description hypothetical protein
nr
ID XP_012086558.1
description PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
swissprot
ID O82799
description B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=1 SV=1
trembl
ID A0A067JMG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20332 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription factor nga1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000512_120 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
2 Hb_000333_010 0.0310463466 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
3 Hb_007187_010 0.0337692719 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
4 Hb_011382_010 0.0374599032 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
5 Hb_009707_020 0.0417438319 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
6 Hb_014056_020 0.0440211828 - - zinc finger protein, putative [Ricinus communis]
7 Hb_002743_010 0.0449730014 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001205_220 0.0461705348 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000010_160 0.0472082712 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
10 Hb_002328_080 0.0479523169 - - short-chain dehydrogenase, putative [Ricinus communis]
11 Hb_074312_010 0.0487876353 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
12 Hb_000731_150 0.0505967336 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
13 Hb_005280_020 0.054439665 - - glycine cleavage system h protein, putative [Ricinus communis]
14 Hb_000915_210 0.0545410196 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005610_070 0.0572306115 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_001571_100 0.057357143 - - chlorophyll A-B binding family protein [Populus trichocarpa]
17 Hb_001135_310 0.0578730515 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
18 Hb_163566_020 0.058548191 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_001519_140 0.0591992283 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
20 Hb_000557_070 0.061677625 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000512_120 Hb_000512_120 Hb_000333_010 Hb_000333_010 Hb_000512_120--Hb_000333_010 Hb_007187_010 Hb_007187_010 Hb_000512_120--Hb_007187_010 Hb_011382_010 Hb_011382_010 Hb_000512_120--Hb_011382_010 Hb_009707_020 Hb_009707_020 Hb_000512_120--Hb_009707_020 Hb_014056_020 Hb_014056_020 Hb_000512_120--Hb_014056_020 Hb_002743_010 Hb_002743_010 Hb_000512_120--Hb_002743_010 Hb_001571_100 Hb_001571_100 Hb_000333_010--Hb_001571_100 Hb_000333_010--Hb_002743_010 Hb_000333_010--Hb_014056_020 Hb_000557_070 Hb_000557_070 Hb_000333_010--Hb_000557_070 Hb_000731_150 Hb_000731_150 Hb_000333_010--Hb_000731_150 Hb_007187_010--Hb_011382_010 Hb_007187_010--Hb_009707_020 Hb_074312_010 Hb_074312_010 Hb_007187_010--Hb_074312_010 Hb_000010_160 Hb_000010_160 Hb_007187_010--Hb_000010_160 Hb_001205_220 Hb_001205_220 Hb_007187_010--Hb_001205_220 Hb_011382_010--Hb_000010_160 Hb_011382_010--Hb_074312_010 Hb_011382_010--Hb_009707_020 Hb_011382_010--Hb_001205_220 Hb_005610_070 Hb_005610_070 Hb_011382_010--Hb_005610_070 Hb_002328_080 Hb_002328_080 Hb_009707_020--Hb_002328_080 Hb_000844_080 Hb_000844_080 Hb_009707_020--Hb_000844_080 Hb_009707_020--Hb_000010_160 Hb_001775_020 Hb_001775_020 Hb_009707_020--Hb_001775_020 Hb_002965_170 Hb_002965_170 Hb_014056_020--Hb_002965_170 Hb_014056_020--Hb_002743_010 Hb_006117_030 Hb_006117_030 Hb_014056_020--Hb_006117_030 Hb_000915_210 Hb_000915_210 Hb_014056_020--Hb_000915_210 Hb_001519_140 Hb_001519_140 Hb_014056_020--Hb_001519_140 Hb_014056_020--Hb_001205_220 Hb_002743_010--Hb_000915_210 Hb_002743_010--Hb_001571_100 Hb_001135_310 Hb_001135_310 Hb_002743_010--Hb_001135_310 Hb_002743_010--Hb_000731_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0143237 2.25338 1.02647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0124075 2.88974

CAGE analysis