Hb_001519_140

Information

Type -
Description -
Location Contig1519: 162717-164825
Sequence    

Annotation

kegg
ID vvi:100257424
description ankyrin repeat-containing protein At5g02620-like
nr
ID XP_010650516.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID F6HN60
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0165g00160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_140 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
2 Hb_002965_170 0.0211336696 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
3 Hb_001205_220 0.0349771814 - - conserved hypothetical protein [Ricinus communis]
4 Hb_014056_020 0.035438849 - - zinc finger protein, putative [Ricinus communis]
5 Hb_004993_020 0.0355155352 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
6 Hb_000010_160 0.0413613484 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
7 Hb_006117_030 0.043992021 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011382_010 0.0462654566 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
9 Hb_000731_150 0.0477325473 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
10 Hb_004735_030 0.0488302383 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
11 Hb_000557_070 0.0510726761 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
12 Hb_007187_010 0.0529187824 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
13 Hb_002743_010 0.0531962912 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004724_090 0.0542532815 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
15 Hb_000915_210 0.0562548841 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005610_070 0.0565020335 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_013394_070 0.0583751777 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
18 Hb_074312_010 0.0583917017 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
19 Hb_000512_120 0.0591992283 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
20 Hb_003086_140 0.0604064875 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001519_140 Hb_001519_140 Hb_002965_170 Hb_002965_170 Hb_001519_140--Hb_002965_170 Hb_001205_220 Hb_001205_220 Hb_001519_140--Hb_001205_220 Hb_014056_020 Hb_014056_020 Hb_001519_140--Hb_014056_020 Hb_004993_020 Hb_004993_020 Hb_001519_140--Hb_004993_020 Hb_000010_160 Hb_000010_160 Hb_001519_140--Hb_000010_160 Hb_006117_030 Hb_006117_030 Hb_001519_140--Hb_006117_030 Hb_002965_170--Hb_014056_020 Hb_002965_170--Hb_006117_030 Hb_002965_170--Hb_001205_220 Hb_000834_160 Hb_000834_160 Hb_002965_170--Hb_000834_160 Hb_000915_210 Hb_000915_210 Hb_002965_170--Hb_000915_210 Hb_011382_010 Hb_011382_010 Hb_001205_220--Hb_011382_010 Hb_001205_220--Hb_000010_160 Hb_007187_010 Hb_007187_010 Hb_001205_220--Hb_007187_010 Hb_000731_150 Hb_000731_150 Hb_001205_220--Hb_000731_150 Hb_074312_010 Hb_074312_010 Hb_001205_220--Hb_074312_010 Hb_002743_010 Hb_002743_010 Hb_014056_020--Hb_002743_010 Hb_014056_020--Hb_006117_030 Hb_014056_020--Hb_000915_210 Hb_014056_020--Hb_001205_220 Hb_003086_140 Hb_003086_140 Hb_004993_020--Hb_003086_140 Hb_068580_010 Hb_068580_010 Hb_004993_020--Hb_068580_010 Hb_004993_020--Hb_000731_150 Hb_000557_070 Hb_000557_070 Hb_004993_020--Hb_000557_070 Hb_004993_020--Hb_000010_160 Hb_000010_160--Hb_011382_010 Hb_009707_020 Hb_009707_020 Hb_000010_160--Hb_009707_020 Hb_000010_160--Hb_007187_010 Hb_000844_080 Hb_000844_080 Hb_000010_160--Hb_000844_080 Hb_002328_080 Hb_002328_080 Hb_000010_160--Hb_002328_080 Hb_001205_140 Hb_001205_140 Hb_006117_030--Hb_001205_140 Hb_006117_030--Hb_000557_070 Hb_006117_030--Hb_000915_210 Hb_004724_090 Hb_004724_090 Hb_006117_030--Hb_004724_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.122209 0.0541495 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.130716

CAGE analysis