Hb_003086_140

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig3086: 117133-121464
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06760g
description POPTRDRAFT_256198; hypothetical protein
nr
ID XP_012074280.1
description PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
swissprot
ID Q10FZ7
description Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
trembl
ID A0A067KIN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32590: 116935-121201 , PASA_asmbl_32591: 121210-121399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_140 0.0 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
2 Hb_004993_020 0.0418950427 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
3 Hb_002328_080 0.0440903562 - - short-chain dehydrogenase, putative [Ricinus communis]
4 Hb_001507_060 0.0450339421 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
5 Hb_000010_160 0.0466559365 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
6 Hb_000844_080 0.047031645 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
7 Hb_009707_020 0.0505570472 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
8 Hb_000731_150 0.0536394787 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
9 Hb_001295_070 0.0541193076 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
10 Hb_001775_020 0.0561424886 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
11 Hb_068580_010 0.056378763 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
12 Hb_011382_010 0.0569680802 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
13 Hb_001205_220 0.0570307438 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001519_140 0.0604064875 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
15 Hb_000077_020 0.0619040554 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007187_010 0.0622155165 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
17 Hb_000139_170 0.0670660326 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
18 Hb_003734_070 0.0681730377 - - chlorophyll A/B binding protein, putative [Ricinus communis]
19 Hb_000512_120 0.0693241406 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
20 Hb_000557_070 0.0698649962 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003086_140 Hb_003086_140 Hb_004993_020 Hb_004993_020 Hb_003086_140--Hb_004993_020 Hb_002328_080 Hb_002328_080 Hb_003086_140--Hb_002328_080 Hb_001507_060 Hb_001507_060 Hb_003086_140--Hb_001507_060 Hb_000010_160 Hb_000010_160 Hb_003086_140--Hb_000010_160 Hb_000844_080 Hb_000844_080 Hb_003086_140--Hb_000844_080 Hb_009707_020 Hb_009707_020 Hb_003086_140--Hb_009707_020 Hb_001519_140 Hb_001519_140 Hb_004993_020--Hb_001519_140 Hb_068580_010 Hb_068580_010 Hb_004993_020--Hb_068580_010 Hb_000731_150 Hb_000731_150 Hb_004993_020--Hb_000731_150 Hb_000557_070 Hb_000557_070 Hb_004993_020--Hb_000557_070 Hb_004993_020--Hb_000010_160 Hb_002328_080--Hb_009707_020 Hb_002328_080--Hb_000844_080 Hb_002328_080--Hb_001507_060 Hb_001295_070 Hb_001295_070 Hb_002328_080--Hb_001295_070 Hb_001775_020 Hb_001775_020 Hb_002328_080--Hb_001775_020 Hb_002328_080--Hb_000010_160 Hb_001507_060--Hb_001295_070 Hb_001507_060--Hb_000844_080 Hb_001507_060--Hb_001775_020 Hb_000139_170 Hb_000139_170 Hb_001507_060--Hb_000139_170 Hb_001507_060--Hb_009707_020 Hb_011382_010 Hb_011382_010 Hb_000010_160--Hb_011382_010 Hb_000010_160--Hb_009707_020 Hb_001205_220 Hb_001205_220 Hb_000010_160--Hb_001205_220 Hb_007187_010 Hb_007187_010 Hb_000010_160--Hb_007187_010 Hb_000010_160--Hb_000844_080 Hb_000844_080--Hb_001775_020 Hb_000844_080--Hb_001295_070 Hb_000844_080--Hb_000139_170 Hb_000844_080--Hb_009707_020 Hb_009707_020--Hb_011382_010 Hb_009707_020--Hb_007187_010 Hb_009707_020--Hb_001775_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 15.3546 9.13212 0 0.0905159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 20.5695

CAGE analysis