Hb_001507_060

Information

Type -
Description -
Location Contig1507: 52072-54721
Sequence    

Annotation

kegg
ID rcu:RCOM_0785110
description translation initiation factor eif-2b gamma subunit, putative
nr
ID XP_002523230.1
description translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
swissprot
ID Q54FQ8
description Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1
trembl
ID B9SB61
description Translation initiation factor eif-2b gamma subunit, putative OS=Ricinus communis GN=RCOM_0785110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_060 0.0 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
2 Hb_001295_070 0.01845857 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
3 Hb_000844_080 0.0221226412 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
4 Hb_001775_020 0.029192027 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
5 Hb_002328_080 0.0320446666 - - short-chain dehydrogenase, putative [Ricinus communis]
6 Hb_000139_170 0.0399570509 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
7 Hb_009707_020 0.0436289496 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
8 Hb_003086_140 0.0450339421 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
9 Hb_158001_010 0.0468767794 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_000010_160 0.0496578316 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
11 Hb_005743_050 0.0503747367 - - unnamed protein product [Coffea canephora]
12 Hb_085682_010 0.0578799162 - - -
13 Hb_000077_020 0.0589446182 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004993_020 0.0591762367 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
15 Hb_004837_010 0.0598177604 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
16 Hb_011382_010 0.0620163597 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
17 Hb_009233_020 0.0620967852 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
18 Hb_003734_070 0.0626718688 - - chlorophyll A/B binding protein, putative [Ricinus communis]
19 Hb_007187_010 0.0645550342 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
20 Hb_068580_010 0.0651064284 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_001507_060 Hb_001507_060 Hb_001295_070 Hb_001295_070 Hb_001507_060--Hb_001295_070 Hb_000844_080 Hb_000844_080 Hb_001507_060--Hb_000844_080 Hb_001775_020 Hb_001775_020 Hb_001507_060--Hb_001775_020 Hb_002328_080 Hb_002328_080 Hb_001507_060--Hb_002328_080 Hb_000139_170 Hb_000139_170 Hb_001507_060--Hb_000139_170 Hb_009707_020 Hb_009707_020 Hb_001507_060--Hb_009707_020 Hb_001295_070--Hb_001775_020 Hb_001295_070--Hb_000844_080 Hb_001295_070--Hb_000139_170 Hb_005743_050 Hb_005743_050 Hb_001295_070--Hb_005743_050 Hb_001295_070--Hb_002328_080 Hb_000844_080--Hb_001775_020 Hb_000844_080--Hb_000139_170 Hb_000844_080--Hb_009707_020 Hb_000844_080--Hb_002328_080 Hb_001775_020--Hb_000139_170 Hb_001775_020--Hb_009707_020 Hb_001775_020--Hb_005743_050 Hb_002328_080--Hb_009707_020 Hb_002328_080--Hb_001775_020 Hb_000010_160 Hb_000010_160 Hb_002328_080--Hb_000010_160 Hb_000139_170--Hb_005743_050 Hb_000139_170--Hb_009707_020 Hb_011382_010 Hb_011382_010 Hb_009707_020--Hb_011382_010 Hb_007187_010 Hb_007187_010 Hb_009707_020--Hb_007187_010 Hb_009707_020--Hb_000010_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0919349 0.0610764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.146264

CAGE analysis