Hb_001295_070

Information

Type -
Description -
Location Contig1295: 59283-67468
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08870g
description POPTRDRAFT_557541; hypothetical protein
nr
ID XP_012073424.1
description PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
swissprot
ID P0C897
description Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1
trembl
ID B9HN24
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08870g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001295_070 0.0 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
2 Hb_001775_020 0.0134134553 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_000844_080 0.0145522692 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
4 Hb_001507_060 0.01845857 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
5 Hb_000139_170 0.0218654914 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
6 Hb_005743_050 0.0337257462 - - unnamed protein product [Coffea canephora]
7 Hb_002328_080 0.0355766438 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_009707_020 0.0382384076 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
9 Hb_158001_010 0.0422064031 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
10 Hb_000010_160 0.0483230531 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
11 Hb_003086_140 0.0541193076 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
12 Hb_000987_030 0.0558324903 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
13 Hb_011382_010 0.0579734726 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
14 Hb_007187_010 0.0605071025 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
15 Hb_000179_010 0.0616749071 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
16 Hb_002014_150 0.0623012157 - - monooxygenase, putative [Ricinus communis]
17 Hb_004837_010 0.063358117 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
18 Hb_163566_020 0.0642436708 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_085682_010 0.0654654144 - - -
20 Hb_000251_150 0.067292499 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001295_070 Hb_001295_070 Hb_001775_020 Hb_001775_020 Hb_001295_070--Hb_001775_020 Hb_000844_080 Hb_000844_080 Hb_001295_070--Hb_000844_080 Hb_001507_060 Hb_001507_060 Hb_001295_070--Hb_001507_060 Hb_000139_170 Hb_000139_170 Hb_001295_070--Hb_000139_170 Hb_005743_050 Hb_005743_050 Hb_001295_070--Hb_005743_050 Hb_002328_080 Hb_002328_080 Hb_001295_070--Hb_002328_080 Hb_001775_020--Hb_000844_080 Hb_001775_020--Hb_000139_170 Hb_001775_020--Hb_001507_060 Hb_009707_020 Hb_009707_020 Hb_001775_020--Hb_009707_020 Hb_001775_020--Hb_005743_050 Hb_000844_080--Hb_001507_060 Hb_000844_080--Hb_000139_170 Hb_000844_080--Hb_009707_020 Hb_000844_080--Hb_002328_080 Hb_001507_060--Hb_002328_080 Hb_001507_060--Hb_000139_170 Hb_001507_060--Hb_009707_020 Hb_000139_170--Hb_005743_050 Hb_000139_170--Hb_009707_020 Hb_000987_030 Hb_000987_030 Hb_005743_050--Hb_000987_030 Hb_158001_010 Hb_158001_010 Hb_005743_050--Hb_158001_010 Hb_000251_150 Hb_000251_150 Hb_005743_050--Hb_000251_150 Hb_002328_080--Hb_009707_020 Hb_002328_080--Hb_001775_020 Hb_000010_160 Hb_000010_160 Hb_002328_080--Hb_000010_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0398086 0.0248266 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0666074

CAGE analysis