Hb_000010_160

Information

Type -
Description -
Location Contig10: 218883-219269
Sequence    

Annotation

kegg
ID tcc:TCM_014508
description hypothetical protein
nr
ID XP_007037789.1
description Uncharacterized protein TCM_014508 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FXP0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_014508 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 043_B09.ab1: 218846-219538

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_160 0.0 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
2 Hb_011382_010 0.020063717 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
3 Hb_009707_020 0.0284782379 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
4 Hb_001205_220 0.0292139974 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007187_010 0.0300762659 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
6 Hb_000844_080 0.0337812842 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
7 Hb_002328_080 0.0372719323 - - short-chain dehydrogenase, putative [Ricinus communis]
8 Hb_074312_010 0.0377158592 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
9 Hb_005610_070 0.039571122 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
10 Hb_001775_020 0.0407631114 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
11 Hb_001519_140 0.0413613484 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
12 Hb_004993_020 0.0453466721 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
13 Hb_002014_150 0.046454776 - - monooxygenase, putative [Ricinus communis]
14 Hb_003086_140 0.0466559365 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
15 Hb_000512_120 0.0472082712 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
16 Hb_163566_020 0.0476917809 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001295_070 0.0483230531 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
18 Hb_000731_150 0.0495490919 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
19 Hb_001507_060 0.0496578316 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
20 Hb_000139_170 0.0499746134 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_160 Hb_000010_160 Hb_011382_010 Hb_011382_010 Hb_000010_160--Hb_011382_010 Hb_009707_020 Hb_009707_020 Hb_000010_160--Hb_009707_020 Hb_001205_220 Hb_001205_220 Hb_000010_160--Hb_001205_220 Hb_007187_010 Hb_007187_010 Hb_000010_160--Hb_007187_010 Hb_000844_080 Hb_000844_080 Hb_000010_160--Hb_000844_080 Hb_002328_080 Hb_002328_080 Hb_000010_160--Hb_002328_080 Hb_011382_010--Hb_007187_010 Hb_074312_010 Hb_074312_010 Hb_011382_010--Hb_074312_010 Hb_011382_010--Hb_009707_020 Hb_011382_010--Hb_001205_220 Hb_005610_070 Hb_005610_070 Hb_011382_010--Hb_005610_070 Hb_009707_020--Hb_002328_080 Hb_009707_020--Hb_007187_010 Hb_009707_020--Hb_000844_080 Hb_001775_020 Hb_001775_020 Hb_009707_020--Hb_001775_020 Hb_001205_220--Hb_007187_010 Hb_001519_140 Hb_001519_140 Hb_001205_220--Hb_001519_140 Hb_000731_150 Hb_000731_150 Hb_001205_220--Hb_000731_150 Hb_001205_220--Hb_074312_010 Hb_007187_010--Hb_074312_010 Hb_000512_120 Hb_000512_120 Hb_007187_010--Hb_000512_120 Hb_000844_080--Hb_001775_020 Hb_001295_070 Hb_001295_070 Hb_000844_080--Hb_001295_070 Hb_001507_060 Hb_001507_060 Hb_000844_080--Hb_001507_060 Hb_000139_170 Hb_000139_170 Hb_000844_080--Hb_000139_170 Hb_000844_080--Hb_002328_080 Hb_002328_080--Hb_001507_060 Hb_002328_080--Hb_001295_070 Hb_002328_080--Hb_001775_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 70.3239 33.7801 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 93.0987

CAGE analysis