Hb_005610_070

Information

Type -
Description -
Location Contig5610: 59831-64274
Sequence    

Annotation

kegg
ID cit:102627523
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006492639.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID A0A061EKN7
description Ribonuclease H protein OS=Theobroma cacao GN=TCM_017273 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48788: 62861-64302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005610_070 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_074312_010 0.016110222 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
3 Hb_010288_070 0.028719781 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
4 Hb_011382_010 0.0315690266 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
5 Hb_002014_150 0.031796149 - - monooxygenase, putative [Ricinus communis]
6 Hb_002304_030 0.0328710919 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
7 Hb_163566_020 0.0338374505 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_003032_080 0.0373145015 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000010_160 0.039571122 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
10 Hb_007187_010 0.0396223307 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
11 Hb_005280_020 0.0413594936 - - glycine cleavage system h protein, putative [Ricinus communis]
12 Hb_005888_020 0.041772882 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
13 Hb_001205_220 0.0449364317 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000297_190 0.0497542878 - - cell wall invertase [Manihot esculenta]
15 Hb_009707_020 0.0523760534 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
16 Hb_002965_170 0.0559782953 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
17 Hb_001519_140 0.0565020335 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
18 Hb_014056_020 0.0567345824 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000512_120 0.0572306115 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
20 Hb_001170_020 0.0573099603 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005610_070 Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_005610_070--Hb_074312_010 Hb_010288_070 Hb_010288_070 Hb_005610_070--Hb_010288_070 Hb_011382_010 Hb_011382_010 Hb_005610_070--Hb_011382_010 Hb_002014_150 Hb_002014_150 Hb_005610_070--Hb_002014_150 Hb_002304_030 Hb_002304_030 Hb_005610_070--Hb_002304_030 Hb_163566_020 Hb_163566_020 Hb_005610_070--Hb_163566_020 Hb_074312_010--Hb_011382_010 Hb_074312_010--Hb_163566_020 Hb_007187_010 Hb_007187_010 Hb_074312_010--Hb_007187_010 Hb_074312_010--Hb_002014_150 Hb_074312_010--Hb_010288_070 Hb_010288_070--Hb_002304_030 Hb_005888_020 Hb_005888_020 Hb_010288_070--Hb_005888_020 Hb_003032_080 Hb_003032_080 Hb_010288_070--Hb_003032_080 Hb_003050_380 Hb_003050_380 Hb_010288_070--Hb_003050_380 Hb_000010_160 Hb_000010_160 Hb_011382_010--Hb_000010_160 Hb_011382_010--Hb_007187_010 Hb_009707_020 Hb_009707_020 Hb_011382_010--Hb_009707_020 Hb_001205_220 Hb_001205_220 Hb_011382_010--Hb_001205_220 Hb_002014_150--Hb_163566_020 Hb_002014_150--Hb_003032_080 Hb_002014_150--Hb_011382_010 Hb_002014_150--Hb_010288_070 Hb_002304_030--Hb_005888_020 Hb_000297_190 Hb_000297_190 Hb_002304_030--Hb_000297_190 Hb_001170_020 Hb_001170_020 Hb_002304_030--Hb_001170_020 Hb_002304_030--Hb_003050_380 Hb_163566_020--Hb_003032_080 Hb_163566_020--Hb_011382_010 Hb_163566_020--Hb_007187_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.80713 1.39013 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.86746

CAGE analysis