Hb_003050_380

Information

Type -
Description -
Location Contig3050: 341939-344983
Sequence    

Annotation

kegg
ID rcu:RCOM_0633810
description Beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_002309869.2
description hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
swissprot
ID Q9LJN4
description Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2
trembl
ID A0A067L1E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04582 PE=4 SV=1
Gene Ontology
ID GO:0008422
description glycosyl hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_380 0.0 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
2 Hb_001170_020 0.0205918401 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005888_020 0.0279019552 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
4 Hb_010288_070 0.0363725524 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
5 Hb_002304_030 0.0374330298 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
6 Hb_000297_190 0.0417142145 - - cell wall invertase [Manihot esculenta]
7 Hb_003032_080 0.042262709 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005754_050 0.0470643523 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
9 Hb_000977_250 0.0514061735 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_023313_050 0.0516488511 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
11 Hb_001862_040 0.0528923387 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
12 Hb_002434_040 0.0543200451 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
13 Hb_000053_010 0.0560527413 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
14 Hb_001710_010 0.0581901498 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
15 Hb_005610_070 0.0588998369 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
16 Hb_005280_020 0.0651186311 - - glycine cleavage system h protein, putative [Ricinus communis]
17 Hb_074312_010 0.0652583642 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
18 Hb_099182_010 0.065577811 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
19 Hb_008484_080 0.0674421083 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
20 Hb_001717_060 0.0677854967 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]

Gene co-expression network

sample Hb_003050_380 Hb_003050_380 Hb_001170_020 Hb_001170_020 Hb_003050_380--Hb_001170_020 Hb_005888_020 Hb_005888_020 Hb_003050_380--Hb_005888_020 Hb_010288_070 Hb_010288_070 Hb_003050_380--Hb_010288_070 Hb_002304_030 Hb_002304_030 Hb_003050_380--Hb_002304_030 Hb_000297_190 Hb_000297_190 Hb_003050_380--Hb_000297_190 Hb_003032_080 Hb_003032_080 Hb_003050_380--Hb_003032_080 Hb_001170_020--Hb_005888_020 Hb_001170_020--Hb_000297_190 Hb_001170_020--Hb_002304_030 Hb_001170_020--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_001170_020--Hb_000977_250 Hb_005888_020--Hb_000297_190 Hb_005888_020--Hb_002304_030 Hb_005888_020--Hb_010288_070 Hb_005610_070 Hb_005610_070 Hb_005888_020--Hb_005610_070 Hb_010288_070--Hb_002304_030 Hb_010288_070--Hb_003032_080 Hb_010288_070--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_010288_070--Hb_074312_010 Hb_002304_030--Hb_000297_190 Hb_002304_030--Hb_005610_070 Hb_000297_190--Hb_010288_070 Hb_003836_040 Hb_003836_040 Hb_000297_190--Hb_003836_040 Hb_002014_150 Hb_002014_150 Hb_003032_080--Hb_002014_150 Hb_001862_040 Hb_001862_040 Hb_003032_080--Hb_001862_040 Hb_163566_020 Hb_163566_020 Hb_003032_080--Hb_163566_020 Hb_003032_080--Hb_005610_070 Hb_003032_080--Hb_074312_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0253391 0.00593702 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0319714

CAGE analysis