Hb_003836_040

Information

Type -
Description -
Location Contig3836: 50127-51653
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02570g
description POPTRDRAFT_765198; CYP77A3p family protein
nr
ID XP_012089888.1
description PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
swissprot
ID O48928
description Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=2 SV=1
trembl
ID A0A067LCN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01518 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 77a3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38679: 50076-51851
cDNA
(Sanger)
(ID:Location)		 011_G03.ab1: 50076-50907 , 046_O13.ab1: 50081-50526 , 052_C06.ab1: 50077-50783

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003836_040 0.0 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
2 Hb_003605_170 0.018544813 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
3 Hb_002284_290 0.0298122338 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
4 Hb_000210_020 0.0318927142 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
5 Hb_000174_120 0.0350321187 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
6 Hb_005797_020 0.0358149886 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
7 Hb_000834_160 0.0372187617 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
8 Hb_003598_070 0.0378022489 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009692_050 0.0383764988 - - -
10 Hb_000297_190 0.0408531458 - - cell wall invertase [Manihot esculenta]
11 Hb_011433_010 0.0437662338 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
12 Hb_000053_010 0.0462299764 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
13 Hb_000414_040 0.0464575409 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
14 Hb_000977_250 0.0497221177 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_014361_160 0.0515236354 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
16 Hb_002434_040 0.0519176974 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
17 Hb_147976_010 0.0552963007 - - -
18 Hb_001170_020 0.0555500491 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004464_040 0.0558226839 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
20 Hb_005888_020 0.0565476635 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]

Gene co-expression network

sample Hb_003836_040 Hb_003836_040 Hb_003605_170 Hb_003605_170 Hb_003836_040--Hb_003605_170 Hb_002284_290 Hb_002284_290 Hb_003836_040--Hb_002284_290 Hb_000210_020 Hb_000210_020 Hb_003836_040--Hb_000210_020 Hb_000174_120 Hb_000174_120 Hb_003836_040--Hb_000174_120 Hb_005797_020 Hb_005797_020 Hb_003836_040--Hb_005797_020 Hb_000834_160 Hb_000834_160 Hb_003836_040--Hb_000834_160 Hb_003605_170--Hb_000210_020 Hb_003605_170--Hb_002284_290 Hb_003605_170--Hb_005797_020 Hb_000053_010 Hb_000053_010 Hb_003605_170--Hb_000053_010 Hb_000977_250 Hb_000977_250 Hb_003605_170--Hb_000977_250 Hb_003598_070 Hb_003598_070 Hb_002284_290--Hb_003598_070 Hb_009692_050 Hb_009692_050 Hb_002284_290--Hb_009692_050 Hb_002284_290--Hb_000834_160 Hb_147976_010 Hb_147976_010 Hb_002284_290--Hb_147976_010 Hb_000210_020--Hb_002284_290 Hb_000210_020--Hb_005797_020 Hb_000210_020--Hb_000053_010 Hb_004464_040 Hb_004464_040 Hb_000210_020--Hb_004464_040 Hb_000414_040 Hb_000414_040 Hb_000174_120--Hb_000414_040 Hb_000174_120--Hb_005797_020 Hb_000174_120--Hb_009692_050 Hb_000174_120--Hb_002284_290 Hb_000174_120--Hb_003605_170 Hb_005797_020--Hb_000414_040 Hb_011433_010 Hb_011433_010 Hb_005797_020--Hb_011433_010 Hb_014361_160 Hb_014361_160 Hb_005797_020--Hb_014361_160 Hb_005797_020--Hb_009692_050 Hb_000834_160--Hb_003598_070 Hb_000834_160--Hb_147976_010 Hb_000834_160--Hb_004464_040 Hb_000834_160--Hb_009692_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.129042 310.683 69.7821 0 0.0402532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00960552 273.131

CAGE analysis