Hb_009692_050

Information

Type -
Description -
Location Contig9692: 37398-38021
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63932: 38286-38512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009692_050 0.0 - - -
2 Hb_147976_010 0.0253263324 - - -
3 Hb_003598_070 0.0270018222 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002284_290 0.0292176936 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_001433_210 0.0295168943 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
6 Hb_000174_120 0.0323816035 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_000414_040 0.0365116807 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
8 Hb_005797_020 0.0375461851 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
9 Hb_003836_040 0.0383764988 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
10 Hb_031862_210 0.0408510796 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
11 Hb_145502_010 0.0416514602 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
12 Hb_000834_160 0.0429430531 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
13 Hb_000018_110 0.0490867714 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
14 Hb_003605_170 0.0499681237 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
15 Hb_000210_020 0.0550479852 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
16 Hb_011433_010 0.0554841235 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]
17 Hb_000142_050 0.0557876862 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
18 Hb_002245_050 0.0640625552 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
19 Hb_001546_140 0.0646172315 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
20 Hb_001205_140 0.0671867671 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]

Gene co-expression network

sample Hb_009692_050 Hb_009692_050 Hb_147976_010 Hb_147976_010 Hb_009692_050--Hb_147976_010 Hb_003598_070 Hb_003598_070 Hb_009692_050--Hb_003598_070 Hb_002284_290 Hb_002284_290 Hb_009692_050--Hb_002284_290 Hb_001433_210 Hb_001433_210 Hb_009692_050--Hb_001433_210 Hb_000174_120 Hb_000174_120 Hb_009692_050--Hb_000174_120 Hb_000414_040 Hb_000414_040 Hb_009692_050--Hb_000414_040 Hb_031862_210 Hb_031862_210 Hb_147976_010--Hb_031862_210 Hb_147976_010--Hb_003598_070 Hb_145502_010 Hb_145502_010 Hb_147976_010--Hb_145502_010 Hb_147976_010--Hb_002284_290 Hb_000834_160 Hb_000834_160 Hb_147976_010--Hb_000834_160 Hb_003598_070--Hb_000834_160 Hb_003598_070--Hb_002284_290 Hb_003836_040 Hb_003836_040 Hb_003598_070--Hb_003836_040 Hb_003598_070--Hb_145502_010 Hb_002284_290--Hb_003836_040 Hb_002284_290--Hb_000834_160 Hb_003605_170 Hb_003605_170 Hb_002284_290--Hb_003605_170 Hb_001433_210--Hb_000414_040 Hb_001546_140 Hb_001546_140 Hb_001433_210--Hb_001546_140 Hb_001433_210--Hb_147976_010 Hb_001433_210--Hb_031862_210 Hb_001433_210--Hb_000174_120 Hb_000174_120--Hb_000414_040 Hb_005797_020 Hb_005797_020 Hb_000174_120--Hb_005797_020 Hb_000174_120--Hb_003836_040 Hb_000174_120--Hb_002284_290 Hb_000174_120--Hb_003605_170 Hb_000414_040--Hb_005797_020 Hb_011433_010 Hb_011433_010 Hb_000414_040--Hb_011433_010 Hb_000414_040--Hb_003836_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.208671 0.0479812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.154601

CAGE analysis