Hb_145502_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig145502: 1526-3967
Sequence    

Annotation

kegg
ID rcu:RCOM_0204890
description r2r3-myb transcription factor, putative
nr
ID XP_012076322.1
description PREDICTED: transcription factor MYB82-like [Jatropha curcas]
swissprot
ID Q9SEI0
description Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1
trembl
ID A0A067KBC2
description MYB family protein OS=Jatropha curcas GN=JCGZ_07008 PE=4 SV=1
Gene Ontology
ID GO:0003677
description tannin-related r2r3 myb transcription partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145502_010 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
2 Hb_031862_210 0.0247666452 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
3 Hb_147976_010 0.0262413433 - - -
4 Hb_000018_110 0.0315021792 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
5 Hb_003598_070 0.0396586443 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009692_050 0.0416514602 - - -
7 Hb_001205_140 0.0434060719 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
8 Hb_002284_290 0.0484533327 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
9 Hb_000142_050 0.0504609083 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
10 Hb_001433_210 0.0520095445 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
11 Hb_000834_160 0.0534242957 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
12 Hb_000174_120 0.055300467 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_001789_220 0.0553432659 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
14 Hb_001253_050 0.0581616528 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_007617_030 0.0617344136 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
16 Hb_002245_050 0.0621826841 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
17 Hb_001546_140 0.0624790634 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
18 Hb_000160_020 0.0649204861 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
19 Hb_003836_040 0.0654530876 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
20 Hb_013394_070 0.0655836995 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]

Gene co-expression network

sample Hb_145502_010 Hb_145502_010 Hb_031862_210 Hb_031862_210 Hb_145502_010--Hb_031862_210 Hb_147976_010 Hb_147976_010 Hb_145502_010--Hb_147976_010 Hb_000018_110 Hb_000018_110 Hb_145502_010--Hb_000018_110 Hb_003598_070 Hb_003598_070 Hb_145502_010--Hb_003598_070 Hb_009692_050 Hb_009692_050 Hb_145502_010--Hb_009692_050 Hb_001205_140 Hb_001205_140 Hb_145502_010--Hb_001205_140 Hb_031862_210--Hb_147976_010 Hb_031862_210--Hb_009692_050 Hb_001433_210 Hb_001433_210 Hb_031862_210--Hb_001433_210 Hb_031862_210--Hb_003598_070 Hb_007617_030 Hb_007617_030 Hb_031862_210--Hb_007617_030 Hb_147976_010--Hb_003598_070 Hb_147976_010--Hb_009692_050 Hb_002284_290 Hb_002284_290 Hb_147976_010--Hb_002284_290 Hb_000834_160 Hb_000834_160 Hb_147976_010--Hb_000834_160 Hb_000018_110--Hb_147976_010 Hb_000018_110--Hb_001205_140 Hb_000142_050 Hb_000142_050 Hb_000018_110--Hb_000142_050 Hb_002245_050 Hb_002245_050 Hb_000018_110--Hb_002245_050 Hb_000018_110--Hb_003598_070 Hb_003598_070--Hb_000834_160 Hb_003598_070--Hb_002284_290 Hb_003598_070--Hb_009692_050 Hb_003836_040 Hb_003836_040 Hb_003598_070--Hb_003836_040 Hb_009692_050--Hb_002284_290 Hb_009692_050--Hb_001433_210 Hb_000174_120 Hb_000174_120 Hb_009692_050--Hb_000174_120 Hb_000414_040 Hb_000414_040 Hb_009692_050--Hb_000414_040 Hb_001789_220 Hb_001789_220 Hb_001205_140--Hb_001789_220 Hb_006117_030 Hb_006117_030 Hb_001205_140--Hb_006117_030 Hb_001205_140--Hb_003598_070 Hb_001205_140--Hb_147976_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.247939 102.398 28.9169 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 72.2236

CAGE analysis