Hb_002245_050

Information

Type -
Description -
Location Contig2245: 116446-117110
Sequence    

Annotation

kegg
ID rcu:RCOM_0181530
description Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative
nr
ID XP_002522826.1
description Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SGH4
description Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana GN=PNSL3 PE=1 SV=1
trembl
ID B9SA07
description Oxygen-evolving enhancer protein 3-1, chloroplast, putative OS=Ricinus communis GN=RCOM_0181530 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbq-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23345: 116442-117320
cDNA
(Sanger)
(ID:Location)		 035_L23.ab1: 116442-117320

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002245_050 0.0 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
2 Hb_000635_240 0.045225436 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
3 Hb_000018_110 0.0484323562 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
4 Hb_000821_030 0.0511470942 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
5 Hb_001433_210 0.0533750151 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
6 Hb_000142_050 0.0542072221 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
7 Hb_002929_030 0.0547302508 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
8 Hb_000174_120 0.055846667 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_000262_090 0.0563663394 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_000172_660 0.0585839355 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
11 Hb_000414_040 0.0599759054 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
12 Hb_004627_050 0.0608359317 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
13 Hb_145502_010 0.0621826841 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
14 Hb_001546_140 0.063026108 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
15 Hb_009692_050 0.0640625552 - - -
16 Hb_001638_060 0.0667704117 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
17 Hb_011316_080 0.0675882848 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_011512_100 0.0682086039 - - PREDICTED: uncharacterized protein LOC105650382 isoform X1 [Jatropha curcas]
19 Hb_031862_210 0.0691988723 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
20 Hb_000210_030 0.0692652645 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]

Gene co-expression network

sample Hb_002245_050 Hb_002245_050 Hb_000635_240 Hb_000635_240 Hb_002245_050--Hb_000635_240 Hb_000018_110 Hb_000018_110 Hb_002245_050--Hb_000018_110 Hb_000821_030 Hb_000821_030 Hb_002245_050--Hb_000821_030 Hb_001433_210 Hb_001433_210 Hb_002245_050--Hb_001433_210 Hb_000142_050 Hb_000142_050 Hb_002245_050--Hb_000142_050 Hb_002929_030 Hb_002929_030 Hb_002245_050--Hb_002929_030 Hb_011316_080 Hb_011316_080 Hb_000635_240--Hb_011316_080 Hb_001546_140 Hb_001546_140 Hb_000635_240--Hb_001546_140 Hb_009771_010 Hb_009771_010 Hb_000635_240--Hb_009771_010 Hb_000635_240--Hb_001433_210 Hb_000635_240--Hb_002929_030 Hb_145502_010 Hb_145502_010 Hb_000018_110--Hb_145502_010 Hb_147976_010 Hb_147976_010 Hb_000018_110--Hb_147976_010 Hb_001205_140 Hb_001205_140 Hb_000018_110--Hb_001205_140 Hb_000018_110--Hb_000142_050 Hb_003598_070 Hb_003598_070 Hb_000018_110--Hb_003598_070 Hb_000262_090 Hb_000262_090 Hb_000821_030--Hb_000262_090 Hb_008013_020 Hb_008013_020 Hb_000821_030--Hb_008013_020 Hb_000210_030 Hb_000210_030 Hb_000821_030--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_000821_030--Hb_006573_110 Hb_000174_120 Hb_000174_120 Hb_000821_030--Hb_000174_120 Hb_009692_050 Hb_009692_050 Hb_001433_210--Hb_009692_050 Hb_000414_040 Hb_000414_040 Hb_001433_210--Hb_000414_040 Hb_001433_210--Hb_001546_140 Hb_001433_210--Hb_147976_010 Hb_031862_210 Hb_031862_210 Hb_001433_210--Hb_031862_210 Hb_001433_210--Hb_000174_120 Hb_000142_050--Hb_145502_010 Hb_000142_050--Hb_009692_050 Hb_000142_050--Hb_000174_120 Hb_000142_050--Hb_001433_210 Hb_002929_030--Hb_009771_010 Hb_002929_030--Hb_001546_140 Hb_001153_170 Hb_001153_170 Hb_002929_030--Hb_001153_170 Hb_007617_030 Hb_007617_030 Hb_002929_030--Hb_007617_030 Hb_089140_130 Hb_089140_130 Hb_002929_030--Hb_089140_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0485266 4.7563 0.911058 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.98172

CAGE analysis