Hb_003598_070

Information

Type -
Description -
Location Contig3598: 226066-226632
Sequence    

Annotation

kegg
ID rcu:RCOM_0800580
description hypothetical protein
nr
ID XP_002516518.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RRZ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0800580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003598_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000834_160 0.0182344334 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
3 Hb_147976_010 0.0236982328 - - -
4 Hb_002284_290 0.0248425519 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
5 Hb_009692_050 0.0270018222 - - -
6 Hb_003836_040 0.0378022489 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
7 Hb_145502_010 0.0396586443 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
8 Hb_031862_210 0.0452725053 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
9 Hb_000174_120 0.0479477882 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_000018_110 0.0488081443 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
11 Hb_004464_040 0.0505821846 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
12 Hb_003605_170 0.0511643324 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
13 Hb_001205_140 0.0527395843 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
14 Hb_001433_210 0.0550009854 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
15 Hb_000210_020 0.055203735 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
16 Hb_005797_020 0.0564499554 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
17 Hb_002965_170 0.0569474156 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
18 Hb_000297_190 0.0595023664 - - cell wall invertase [Manihot esculenta]
19 Hb_000414_040 0.0605007511 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
20 Hb_000142_050 0.0647113002 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_003598_070 Hb_003598_070 Hb_000834_160 Hb_000834_160 Hb_003598_070--Hb_000834_160 Hb_147976_010 Hb_147976_010 Hb_003598_070--Hb_147976_010 Hb_002284_290 Hb_002284_290 Hb_003598_070--Hb_002284_290 Hb_009692_050 Hb_009692_050 Hb_003598_070--Hb_009692_050 Hb_003836_040 Hb_003836_040 Hb_003598_070--Hb_003836_040 Hb_145502_010 Hb_145502_010 Hb_003598_070--Hb_145502_010 Hb_000834_160--Hb_002284_290 Hb_000834_160--Hb_003836_040 Hb_000834_160--Hb_147976_010 Hb_004464_040 Hb_004464_040 Hb_000834_160--Hb_004464_040 Hb_000834_160--Hb_009692_050 Hb_031862_210 Hb_031862_210 Hb_147976_010--Hb_031862_210 Hb_147976_010--Hb_009692_050 Hb_147976_010--Hb_145502_010 Hb_147976_010--Hb_002284_290 Hb_002284_290--Hb_009692_050 Hb_002284_290--Hb_003836_040 Hb_003605_170 Hb_003605_170 Hb_002284_290--Hb_003605_170 Hb_001433_210 Hb_001433_210 Hb_009692_050--Hb_001433_210 Hb_000174_120 Hb_000174_120 Hb_009692_050--Hb_000174_120 Hb_000414_040 Hb_000414_040 Hb_009692_050--Hb_000414_040 Hb_003836_040--Hb_003605_170 Hb_000210_020 Hb_000210_020 Hb_003836_040--Hb_000210_020 Hb_003836_040--Hb_000174_120 Hb_005797_020 Hb_005797_020 Hb_003836_040--Hb_005797_020 Hb_145502_010--Hb_031862_210 Hb_000018_110 Hb_000018_110 Hb_145502_010--Hb_000018_110 Hb_145502_010--Hb_009692_050 Hb_001205_140 Hb_001205_140 Hb_145502_010--Hb_001205_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.82877 0.503429 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.49086

CAGE analysis