Hb_002284_290

Information

Type -
Description -
Location Contig2284: 223411-224794
Sequence    

Annotation

kegg
ID cit:102619385
description transport and Golgi organization 2 homolog
nr
ID XP_012073640.1
description PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
swissprot
ID P54797
description Transport and Golgi organization 2 homolog OS=Mus musculus GN=Tango2 PE=2 SV=1
trembl
ID A0A067KP76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08074 PE=4 SV=1
Gene Ontology
ID GO:0016740
description transport and golgi organization 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23840: 223287-224930
cDNA
(Sanger)
(ID:Location)		 002_G18.ab1: 223626-224831 , 048_K04.ab1: 223844-224924 , 048_O14.ab1: 223883-224925

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_290 0.0 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
2 Hb_003598_070 0.0248425519 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009692_050 0.0292176936 - - -
4 Hb_003836_040 0.0298122338 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
5 Hb_000834_160 0.0315777642 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
6 Hb_147976_010 0.0368708283 - - -
7 Hb_003605_170 0.0382308023 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
8 Hb_000174_120 0.0397143517 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_000210_020 0.0463595223 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
10 Hb_005797_020 0.0482788609 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
11 Hb_145502_010 0.0484533327 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
12 Hb_000018_110 0.0516583302 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
13 Hb_000414_040 0.0518247914 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
14 Hb_004464_040 0.0529652647 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
15 Hb_001433_210 0.0540918035 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
16 Hb_031862_210 0.0545686137 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
17 Hb_001205_140 0.0547971929 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
18 Hb_000142_050 0.0576555703 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
19 Hb_000297_190 0.0583388692 - - cell wall invertase [Manihot esculenta]
20 Hb_011433_010 0.0619364813 - - PREDICTED: (R)-mandelonitrile lyase-like [Populus euphratica]

Gene co-expression network

sample Hb_002284_290 Hb_002284_290 Hb_003598_070 Hb_003598_070 Hb_002284_290--Hb_003598_070 Hb_009692_050 Hb_009692_050 Hb_002284_290--Hb_009692_050 Hb_003836_040 Hb_003836_040 Hb_002284_290--Hb_003836_040 Hb_000834_160 Hb_000834_160 Hb_002284_290--Hb_000834_160 Hb_147976_010 Hb_147976_010 Hb_002284_290--Hb_147976_010 Hb_003605_170 Hb_003605_170 Hb_002284_290--Hb_003605_170 Hb_003598_070--Hb_000834_160 Hb_003598_070--Hb_147976_010 Hb_003598_070--Hb_009692_050 Hb_003598_070--Hb_003836_040 Hb_145502_010 Hb_145502_010 Hb_003598_070--Hb_145502_010 Hb_009692_050--Hb_147976_010 Hb_001433_210 Hb_001433_210 Hb_009692_050--Hb_001433_210 Hb_000174_120 Hb_000174_120 Hb_009692_050--Hb_000174_120 Hb_000414_040 Hb_000414_040 Hb_009692_050--Hb_000414_040 Hb_003836_040--Hb_003605_170 Hb_000210_020 Hb_000210_020 Hb_003836_040--Hb_000210_020 Hb_003836_040--Hb_000174_120 Hb_005797_020 Hb_005797_020 Hb_003836_040--Hb_005797_020 Hb_003836_040--Hb_000834_160 Hb_000834_160--Hb_147976_010 Hb_004464_040 Hb_004464_040 Hb_000834_160--Hb_004464_040 Hb_000834_160--Hb_009692_050 Hb_031862_210 Hb_031862_210 Hb_147976_010--Hb_031862_210 Hb_147976_010--Hb_145502_010 Hb_003605_170--Hb_000210_020 Hb_003605_170--Hb_005797_020 Hb_000053_010 Hb_000053_010 Hb_003605_170--Hb_000053_010 Hb_000977_250 Hb_000977_250 Hb_003605_170--Hb_000977_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0355505 207.201 51.9503 0 0.0700585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0384221 0 0.231607 169.425

CAGE analysis