Hb_000018_110

Information

Type -
Description -
Location Contig18: 121027-122273
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00370g
description hypothetical protein
nr
ID XP_006371702.1
description hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
swissprot
ID Q5XF85
description E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2
trembl
ID U5FGS6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00370g PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase atl42-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17419: 121108-121519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000018_110 0.0 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
2 Hb_145502_010 0.0315021792 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
3 Hb_147976_010 0.0469954932 - - -
4 Hb_001205_140 0.0479740917 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
5 Hb_000142_050 0.0482901741 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
6 Hb_002245_050 0.0484323562 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
7 Hb_003598_070 0.0488081443 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009692_050 0.0490867714 - - -
9 Hb_000174_120 0.0491418006 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_002284_290 0.0516583302 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
11 Hb_031862_210 0.0522435068 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
12 Hb_000262_090 0.0526659479 - - Root phototropism protein, putative [Ricinus communis]
13 Hb_000210_030 0.052763411 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
14 Hb_000061_010 0.0560769253 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000834_160 0.0576061866 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
16 Hb_002042_090 0.0591542369 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
17 Hb_001789_220 0.0598475405 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
18 Hb_003836_040 0.0599417778 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
19 Hb_000821_030 0.0601832028 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
20 Hb_001433_210 0.061190506 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]

Gene co-expression network

sample Hb_000018_110 Hb_000018_110 Hb_145502_010 Hb_145502_010 Hb_000018_110--Hb_145502_010 Hb_147976_010 Hb_147976_010 Hb_000018_110--Hb_147976_010 Hb_001205_140 Hb_001205_140 Hb_000018_110--Hb_001205_140 Hb_000142_050 Hb_000142_050 Hb_000018_110--Hb_000142_050 Hb_002245_050 Hb_002245_050 Hb_000018_110--Hb_002245_050 Hb_003598_070 Hb_003598_070 Hb_000018_110--Hb_003598_070 Hb_031862_210 Hb_031862_210 Hb_145502_010--Hb_031862_210 Hb_145502_010--Hb_147976_010 Hb_145502_010--Hb_003598_070 Hb_009692_050 Hb_009692_050 Hb_145502_010--Hb_009692_050 Hb_145502_010--Hb_001205_140 Hb_147976_010--Hb_031862_210 Hb_147976_010--Hb_003598_070 Hb_147976_010--Hb_009692_050 Hb_002284_290 Hb_002284_290 Hb_147976_010--Hb_002284_290 Hb_000834_160 Hb_000834_160 Hb_147976_010--Hb_000834_160 Hb_001789_220 Hb_001789_220 Hb_001205_140--Hb_001789_220 Hb_006117_030 Hb_006117_030 Hb_001205_140--Hb_006117_030 Hb_001205_140--Hb_003598_070 Hb_001205_140--Hb_147976_010 Hb_000142_050--Hb_145502_010 Hb_000142_050--Hb_002245_050 Hb_000142_050--Hb_009692_050 Hb_000174_120 Hb_000174_120 Hb_000142_050--Hb_000174_120 Hb_001433_210 Hb_001433_210 Hb_000142_050--Hb_001433_210 Hb_000635_240 Hb_000635_240 Hb_002245_050--Hb_000635_240 Hb_000821_030 Hb_000821_030 Hb_002245_050--Hb_000821_030 Hb_002245_050--Hb_001433_210 Hb_002929_030 Hb_002929_030 Hb_002245_050--Hb_002929_030 Hb_003598_070--Hb_000834_160 Hb_003598_070--Hb_002284_290 Hb_003598_070--Hb_009692_050 Hb_003836_040 Hb_003836_040 Hb_003598_070--Hb_003836_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0191108 2.2494 0.588284 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.6861

CAGE analysis