Hb_006117_030

Information

Type -
Description -
Location Contig6117: 35682-38630
Sequence    

Annotation

kegg
ID rcu:RCOM_0553640
description hypothetical protein
nr
ID XP_002525125.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SIN2
description Protein trichome birefringence-like 39 OS=Arabidopsis thaliana GN=TBL39 PE=2 SV=1
trembl
ID B9SGK6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0553640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51002: 35741-38611
cDNA
(Sanger)
(ID:Location)		 008_J22.ab1: 35737-37824 , 014_F18.ab1: 38470-38588 , 029_A13.ab1: 35741-37671 , 043_D23.ab1: 35746-37813

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006117_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_014056_020 0.0326076743 - - zinc finger protein, putative [Ricinus communis]
3 Hb_002965_170 0.0374598722 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
4 Hb_001205_140 0.041013785 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
5 Hb_000557_070 0.0411581367 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
6 Hb_000915_210 0.0434129358 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004724_090 0.0438240136 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
8 Hb_001519_140 0.043992021 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
9 Hb_002743_010 0.0465931699 - - conserved hypothetical protein [Ricinus communis]
10 Hb_013394_070 0.0470060169 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
11 Hb_001789_220 0.0483588963 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
12 Hb_004735_030 0.0498538068 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
13 Hb_000777_080 0.0563518041 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
14 Hb_000333_010 0.0563909406 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
15 Hb_000731_150 0.0591332263 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
16 Hb_001571_100 0.0594623578 - - chlorophyll A-B binding family protein [Populus trichocarpa]
17 Hb_001206_110 0.0602554078 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
18 Hb_004993_020 0.0624414552 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
19 Hb_000834_160 0.0626311532 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
20 Hb_001205_220 0.062691155 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006117_030 Hb_006117_030 Hb_014056_020 Hb_014056_020 Hb_006117_030--Hb_014056_020 Hb_002965_170 Hb_002965_170 Hb_006117_030--Hb_002965_170 Hb_001205_140 Hb_001205_140 Hb_006117_030--Hb_001205_140 Hb_000557_070 Hb_000557_070 Hb_006117_030--Hb_000557_070 Hb_000915_210 Hb_000915_210 Hb_006117_030--Hb_000915_210 Hb_004724_090 Hb_004724_090 Hb_006117_030--Hb_004724_090 Hb_014056_020--Hb_002965_170 Hb_002743_010 Hb_002743_010 Hb_014056_020--Hb_002743_010 Hb_014056_020--Hb_000915_210 Hb_001519_140 Hb_001519_140 Hb_014056_020--Hb_001519_140 Hb_001205_220 Hb_001205_220 Hb_014056_020--Hb_001205_220 Hb_002965_170--Hb_001519_140 Hb_002965_170--Hb_001205_220 Hb_000834_160 Hb_000834_160 Hb_002965_170--Hb_000834_160 Hb_002965_170--Hb_000915_210 Hb_001789_220 Hb_001789_220 Hb_001205_140--Hb_001789_220 Hb_145502_010 Hb_145502_010 Hb_001205_140--Hb_145502_010 Hb_000018_110 Hb_000018_110 Hb_001205_140--Hb_000018_110 Hb_003598_070 Hb_003598_070 Hb_001205_140--Hb_003598_070 Hb_147976_010 Hb_147976_010 Hb_001205_140--Hb_147976_010 Hb_000557_070--Hb_004724_090 Hb_004993_020 Hb_004993_020 Hb_000557_070--Hb_004993_020 Hb_068580_010 Hb_068580_010 Hb_000557_070--Hb_068580_010 Hb_000731_150 Hb_000731_150 Hb_000557_070--Hb_000731_150 Hb_000557_070--Hb_002743_010 Hb_000915_210--Hb_002743_010 Hb_000915_210--Hb_000731_150 Hb_001571_100 Hb_001571_100 Hb_000915_210--Hb_001571_100 Hb_004735_030 Hb_004735_030 Hb_004724_090--Hb_004735_030 Hb_004724_090--Hb_004993_020 Hb_004724_090--Hb_000731_150 Hb_001206_110 Hb_001206_110 Hb_004724_090--Hb_001206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.197236 65.0259 27.1329 0 0.0270672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.135508 60.3042

CAGE analysis