Hb_004993_020

Information

Type -
Description -
Location Contig4993: 28283-29100
Sequence    

Annotation

kegg
ID bvg:104890706
description putative ribonuclease H protein At1g65750
nr
ID XP_010674584.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID G0Y6V9
description Putative uncharacterized protein OS=Arachis hypogaea GN=205D04_9 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45611: 27840-27957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004993_020 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
2 Hb_001519_140 0.0355155352 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
3 Hb_003086_140 0.0418950427 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
4 Hb_068580_010 0.0423401593 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
5 Hb_000731_150 0.0437066067 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
6 Hb_000557_070 0.0449734505 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
7 Hb_000010_160 0.0453466721 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
8 Hb_004735_030 0.0461801632 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
9 Hb_001205_220 0.0473328823 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002328_080 0.0511313471 - - short-chain dehydrogenase, putative [Ricinus communis]
11 Hb_004724_090 0.051338111 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
12 Hb_002965_170 0.0548514325 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
13 Hb_011382_010 0.0575027294 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
14 Hb_001507_060 0.0591762367 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
15 Hb_014056_020 0.0602440576 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000844_080 0.060448467 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
17 Hb_009707_020 0.0606371635 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
18 Hb_001141_180 0.0617401291 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
19 Hb_007187_010 0.0621738219 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
20 Hb_006117_030 0.0624414552 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004993_020 Hb_004993_020 Hb_001519_140 Hb_001519_140 Hb_004993_020--Hb_001519_140 Hb_003086_140 Hb_003086_140 Hb_004993_020--Hb_003086_140 Hb_068580_010 Hb_068580_010 Hb_004993_020--Hb_068580_010 Hb_000731_150 Hb_000731_150 Hb_004993_020--Hb_000731_150 Hb_000557_070 Hb_000557_070 Hb_004993_020--Hb_000557_070 Hb_000010_160 Hb_000010_160 Hb_004993_020--Hb_000010_160 Hb_002965_170 Hb_002965_170 Hb_001519_140--Hb_002965_170 Hb_001205_220 Hb_001205_220 Hb_001519_140--Hb_001205_220 Hb_014056_020 Hb_014056_020 Hb_001519_140--Hb_014056_020 Hb_001519_140--Hb_000010_160 Hb_006117_030 Hb_006117_030 Hb_001519_140--Hb_006117_030 Hb_002328_080 Hb_002328_080 Hb_003086_140--Hb_002328_080 Hb_001507_060 Hb_001507_060 Hb_003086_140--Hb_001507_060 Hb_003086_140--Hb_000010_160 Hb_000844_080 Hb_000844_080 Hb_003086_140--Hb_000844_080 Hb_009707_020 Hb_009707_020 Hb_003086_140--Hb_009707_020 Hb_003734_070 Hb_003734_070 Hb_068580_010--Hb_003734_070 Hb_068580_010--Hb_000557_070 Hb_068580_010--Hb_000731_150 Hb_000077_020 Hb_000077_020 Hb_068580_010--Hb_000077_020 Hb_004880_020 Hb_004880_020 Hb_068580_010--Hb_004880_020 Hb_000731_150--Hb_001205_220 Hb_002743_010 Hb_002743_010 Hb_000731_150--Hb_002743_010 Hb_000731_150--Hb_000557_070 Hb_000731_150--Hb_001519_140 Hb_004724_090 Hb_004724_090 Hb_000557_070--Hb_004724_090 Hb_000557_070--Hb_006117_030 Hb_000557_070--Hb_002743_010 Hb_011382_010 Hb_011382_010 Hb_000010_160--Hb_011382_010 Hb_000010_160--Hb_009707_020 Hb_000010_160--Hb_001205_220 Hb_007187_010 Hb_007187_010 Hb_000010_160--Hb_007187_010 Hb_000010_160--Hb_000844_080 Hb_000010_160--Hb_002328_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.101875 0.0570667 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.1181

CAGE analysis