Hb_002743_010

Information

Type -
Description -
Location Contig2743: 10953-13363
Sequence    

Annotation

kegg
ID rcu:RCOM_1354260
description hypothetical protein
nr
ID XP_002519479.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0G0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1354260 PE=4 SV=1
Gene Ontology
ID GO:0005886
description gata zinc finger domain-containing protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28726: 10981-13452 , PASA_asmbl_28727: 12269-12595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002743_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_014056_020 0.0307285778 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000915_210 0.0315518961 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001571_100 0.0392095147 - - chlorophyll A-B binding family protein [Populus trichocarpa]
5 Hb_001135_310 0.0431238527 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
6 Hb_000512_120 0.0449730014 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
7 Hb_000731_150 0.0450609635 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
8 Hb_006117_030 0.0465931699 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000557_070 0.0467941347 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
10 Hb_000333_010 0.0490649145 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
11 Hb_001205_220 0.0494210155 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007187_010 0.0501810479 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
13 Hb_002965_170 0.0504738685 transcription factor TF Family: MYB PREDICTED: myb-related protein P [Jatropha curcas]
14 Hb_001519_140 0.0531962912 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
15 Hb_005280_020 0.053269455 - - glycine cleavage system h protein, putative [Ricinus communis]
16 Hb_000719_030 0.0543606764 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
17 Hb_004724_090 0.055258054 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
18 Hb_011382_010 0.0570018314 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
19 Hb_146225_020 0.0636244911 - - chlorophyll A/B binding protein, putative [Ricinus communis]
20 Hb_005345_020 0.0636776402 - - Root phototropism protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002743_010 Hb_002743_010 Hb_014056_020 Hb_014056_020 Hb_002743_010--Hb_014056_020 Hb_000915_210 Hb_000915_210 Hb_002743_010--Hb_000915_210 Hb_001571_100 Hb_001571_100 Hb_002743_010--Hb_001571_100 Hb_001135_310 Hb_001135_310 Hb_002743_010--Hb_001135_310 Hb_000512_120 Hb_000512_120 Hb_002743_010--Hb_000512_120 Hb_000731_150 Hb_000731_150 Hb_002743_010--Hb_000731_150 Hb_002965_170 Hb_002965_170 Hb_014056_020--Hb_002965_170 Hb_006117_030 Hb_006117_030 Hb_014056_020--Hb_006117_030 Hb_014056_020--Hb_000915_210 Hb_001519_140 Hb_001519_140 Hb_014056_020--Hb_001519_140 Hb_001205_220 Hb_001205_220 Hb_014056_020--Hb_001205_220 Hb_000915_210--Hb_006117_030 Hb_000915_210--Hb_002965_170 Hb_000915_210--Hb_000731_150 Hb_000915_210--Hb_001571_100 Hb_002028_020 Hb_002028_020 Hb_001571_100--Hb_002028_020 Hb_005345_020 Hb_005345_020 Hb_001571_100--Hb_005345_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_041433_010 Hb_041433_010 Hb_001571_100--Hb_041433_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070 Hb_000719_030 Hb_000719_030 Hb_001135_310--Hb_000719_030 Hb_146225_020 Hb_146225_020 Hb_001135_310--Hb_146225_020 Hb_005280_020 Hb_005280_020 Hb_001135_310--Hb_005280_020 Hb_002818_110 Hb_002818_110 Hb_001135_310--Hb_002818_110 Hb_001135_310--Hb_000915_210 Hb_000512_120--Hb_000333_010 Hb_007187_010 Hb_007187_010 Hb_000512_120--Hb_007187_010 Hb_011382_010 Hb_011382_010 Hb_000512_120--Hb_011382_010 Hb_009707_020 Hb_009707_020 Hb_000512_120--Hb_009707_020 Hb_000512_120--Hb_014056_020 Hb_000731_150--Hb_001205_220 Hb_004993_020 Hb_004993_020 Hb_000731_150--Hb_004993_020 Hb_000731_150--Hb_000557_070 Hb_000731_150--Hb_001519_140 Hb_068580_010 Hb_068580_010 Hb_000731_150--Hb_068580_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0707211 2.04545 183.144 77.6716 0.0441983 0.0530256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.162124 0 0 0.154025 200.255

CAGE analysis