Hb_005345_020

Information

Type -
Description -
Location Contig5345: 50096-52970
Sequence    

Annotation

kegg
ID rcu:RCOM_1545860
description Root phototropism protein, putative
nr
ID XP_002515696.1
description Root phototropism protein, putative [Ricinus communis]
swissprot
ID Q9C5J4
description BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1
trembl
ID B9RPM7
description Root phototropism protein, putative OS=Ricinus communis GN=RCOM_1545860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47499: 49883-51575 , PASA_asmbl_47500: 51581-52958
cDNA
(Sanger)
(ID:Location)		 044_J04.ab1: 50393-51373

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005345_020 0.0 - - Root phototropism protein, putative [Ricinus communis]
2 Hb_009476_030 0.0364890118 - - fatty acid desaturase [Manihot esculenta]
3 Hb_001675_090 0.0372129376 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
4 Hb_041433_010 0.0425068718 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
5 Hb_001571_100 0.0457194005 - - chlorophyll A-B binding family protein [Populus trichocarpa]
6 Hb_001975_120 0.0509023967 - - chlorophyll a/b binding protein type II [Glycine max]
7 Hb_001789_220 0.0536009977 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
8 Hb_000719_030 0.0548864528 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
9 Hb_002042_090 0.0558648719 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
10 Hb_001205_140 0.0568968308 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
11 Hb_000210_030 0.0584467993 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
12 Hb_002743_010 0.0636776402 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000915_210 0.0641218688 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006117_030 0.0656711221 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003573_030 0.0670519224 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
16 Hb_000069_220 0.0684065348 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
17 Hb_146225_020 0.0688097473 - - chlorophyll A/B binding protein, putative [Ricinus communis]
18 Hb_002818_110 0.0693860628 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
19 Hb_014056_020 0.0707915523 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000608_270 0.0711967682 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005345_020 Hb_005345_020 Hb_009476_030 Hb_009476_030 Hb_005345_020--Hb_009476_030 Hb_001675_090 Hb_001675_090 Hb_005345_020--Hb_001675_090 Hb_041433_010 Hb_041433_010 Hb_005345_020--Hb_041433_010 Hb_001571_100 Hb_001571_100 Hb_005345_020--Hb_001571_100 Hb_001975_120 Hb_001975_120 Hb_005345_020--Hb_001975_120 Hb_001789_220 Hb_001789_220 Hb_005345_020--Hb_001789_220 Hb_002042_090 Hb_002042_090 Hb_009476_030--Hb_002042_090 Hb_009476_030--Hb_001975_120 Hb_009476_030--Hb_001675_090 Hb_009476_030--Hb_041433_010 Hb_009476_030--Hb_001789_220 Hb_000719_030 Hb_000719_030 Hb_001675_090--Hb_000719_030 Hb_002818_110 Hb_002818_110 Hb_001675_090--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_001675_090--Hb_000210_030 Hb_000061_010 Hb_000061_010 Hb_001675_090--Hb_000061_010 Hb_041433_010--Hb_001789_220 Hb_041433_010--Hb_001571_100 Hb_000608_270 Hb_000608_270 Hb_041433_010--Hb_000608_270 Hb_007681_010 Hb_007681_010 Hb_041433_010--Hb_007681_010 Hb_002743_010 Hb_002743_010 Hb_001571_100--Hb_002743_010 Hb_002028_020 Hb_002028_020 Hb_001571_100--Hb_002028_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070 Hb_000530_040 Hb_000530_040 Hb_001975_120--Hb_000530_040 Hb_000697_030 Hb_000697_030 Hb_001975_120--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_001975_120--Hb_003573_030 Hb_001424_010 Hb_001424_010 Hb_001975_120--Hb_001424_010 Hb_001205_140 Hb_001205_140 Hb_001789_220--Hb_001205_140 Hb_006117_030 Hb_006117_030 Hb_001789_220--Hb_006117_030 Hb_001789_220--Hb_002042_090 Hb_001789_220--Hb_007681_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.151135 5.75649 2.12248 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0428474 5.15121

CAGE analysis