Hb_001975_120

Information

Type -
Description -
Location Contig1975: 90778-92172
Sequence    

Annotation

kegg
ID gmx:100793702
description chlorophyll a-b binding protein 151, chloroplastic-like
nr
ID AAL29886.1
description chlorophyll a/b binding protein type II [Glycine max]
swissprot
ID P10049
description Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1
trembl
ID Q93YG3
description Chlorophyll a/b binding protein type II OS=Glycine max GN=Cab-6 PE=4 SV=1
Gene Ontology
ID GO:0005774
description protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19830: 90452-92194 , PASA_asmbl_19831: 85087-92194 , PASA_asmbl_19834: 85087-92013
cDNA
(Sanger)
(ID:Location)		 011_I10.ab1: 85527-92194 , 011_M13.ab1: 85514-92194 , 053_I11.ab1: 85491-92194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001975_120 0.0 - - chlorophyll a/b binding protein type II [Glycine max]
2 Hb_000530_040 0.0473233934 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
3 Hb_000697_030 0.0494385992 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
4 Hb_005345_020 0.0509023967 - - Root phototropism protein, putative [Ricinus communis]
5 Hb_003573_030 0.051898765 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
6 Hb_009476_030 0.0519288421 - - fatty acid desaturase [Manihot esculenta]
7 Hb_001424_010 0.0545902518 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_001675_090 0.0558473027 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
9 Hb_001343_030 0.0575845908 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
10 Hb_000608_270 0.0610474361 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000069_220 0.062347511 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
12 Hb_001266_010 0.0626502509 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
13 Hb_000719_030 0.0667858358 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
14 Hb_002272_210 0.069132187 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
15 Hb_146225_020 0.0695309004 - - chlorophyll A/B binding protein, putative [Ricinus communis]
16 Hb_041433_010 0.0696521633 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
17 Hb_003651_030 0.0697272372 - - lyase, putative [Ricinus communis]
18 Hb_003038_230 0.0700124828 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
19 Hb_001159_050 0.0710816191 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
20 Hb_000210_030 0.0717701119 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]

Gene co-expression network

sample Hb_001975_120 Hb_001975_120 Hb_000530_040 Hb_000530_040 Hb_001975_120--Hb_000530_040 Hb_000697_030 Hb_000697_030 Hb_001975_120--Hb_000697_030 Hb_005345_020 Hb_005345_020 Hb_001975_120--Hb_005345_020 Hb_003573_030 Hb_003573_030 Hb_001975_120--Hb_003573_030 Hb_009476_030 Hb_009476_030 Hb_001975_120--Hb_009476_030 Hb_001424_010 Hb_001424_010 Hb_001975_120--Hb_001424_010 Hb_000530_040--Hb_001424_010 Hb_000530_040--Hb_000697_030 Hb_000530_040--Hb_003573_030 Hb_000069_220 Hb_000069_220 Hb_000530_040--Hb_000069_220 Hb_078954_030 Hb_078954_030 Hb_000530_040--Hb_078954_030 Hb_000697_030--Hb_000069_220 Hb_000697_030--Hb_003573_030 Hb_000697_030--Hb_001424_010 Hb_004411_010 Hb_004411_010 Hb_000697_030--Hb_004411_010 Hb_005345_020--Hb_009476_030 Hb_001675_090 Hb_001675_090 Hb_005345_020--Hb_001675_090 Hb_041433_010 Hb_041433_010 Hb_005345_020--Hb_041433_010 Hb_001571_100 Hb_001571_100 Hb_005345_020--Hb_001571_100 Hb_001789_220 Hb_001789_220 Hb_005345_020--Hb_001789_220 Hb_000281_120 Hb_000281_120 Hb_003573_030--Hb_000281_120 Hb_003651_030 Hb_003651_030 Hb_003573_030--Hb_003651_030 Hb_000210_030 Hb_000210_030 Hb_003573_030--Hb_000210_030 Hb_003573_030--Hb_000069_220 Hb_002042_090 Hb_002042_090 Hb_009476_030--Hb_002042_090 Hb_009476_030--Hb_001675_090 Hb_009476_030--Hb_041433_010 Hb_009476_030--Hb_001789_220 Hb_001424_010--Hb_078954_030 Hb_179129_010 Hb_179129_010 Hb_001424_010--Hb_179129_010 Hb_016371_010 Hb_016371_010 Hb_001424_010--Hb_016371_010 Hb_000025_700 Hb_000025_700 Hb_001424_010--Hb_000025_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.19669 149.372 2363.16 847.034 0.0610581 0.525617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.289642 0.683183 0 17.5006 2174.64

CAGE analysis