Hb_000069_220

Information

Type transcription factor
Description TF Family: ERF
Location Contig69: 229521-230096
Sequence    

Annotation

kegg
ID rcu:RCOM_0717590
description Transcriptional factor TINY, putative
nr
ID XP_012083196.1
description PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
swissprot
ID Q1ECI2
description Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1
trembl
ID A0A067K864
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14246 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf023-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54190: 229581-229750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_220 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
2 Hb_000697_030 0.0354972254 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
3 Hb_003573_030 0.0422040713 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
4 Hb_004411_010 0.0427267034 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
5 Hb_007853_030 0.0501637629 - - structural molecule, putative [Ricinus communis]
6 Hb_000530_040 0.0545603815 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
7 Hb_000210_030 0.0612919227 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
8 Hb_000069_440 0.061417535 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
9 Hb_001975_120 0.062347511 - - chlorophyll a/b binding protein type II [Glycine max]
10 Hb_009476_030 0.0653687445 - - fatty acid desaturase [Manihot esculenta]
11 Hb_005345_020 0.0684065348 - - Root phototropism protein, putative [Ricinus communis]
12 Hb_007681_010 0.0687703202 - - hypothetical protein RCOM_2128750 [Ricinus communis]
13 Hb_016371_010 0.0689794118 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
14 Hb_041433_010 0.0704425208 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
15 Hb_002042_090 0.0704938347 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
16 Hb_001424_010 0.0705564004 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_001675_090 0.0728482312 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
18 Hb_000281_120 0.0741981391 - - protein binding protein, putative [Ricinus communis]
19 Hb_000018_110 0.0746728549 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
20 Hb_003651_030 0.0756467164 - - lyase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_220 Hb_000069_220 Hb_000697_030 Hb_000697_030 Hb_000069_220--Hb_000697_030 Hb_003573_030 Hb_003573_030 Hb_000069_220--Hb_003573_030 Hb_004411_010 Hb_004411_010 Hb_000069_220--Hb_004411_010 Hb_007853_030 Hb_007853_030 Hb_000069_220--Hb_007853_030 Hb_000530_040 Hb_000530_040 Hb_000069_220--Hb_000530_040 Hb_000210_030 Hb_000210_030 Hb_000069_220--Hb_000210_030 Hb_000697_030--Hb_003573_030 Hb_000697_030--Hb_000530_040 Hb_001424_010 Hb_001424_010 Hb_000697_030--Hb_001424_010 Hb_000697_030--Hb_004411_010 Hb_001975_120 Hb_001975_120 Hb_000697_030--Hb_001975_120 Hb_000281_120 Hb_000281_120 Hb_003573_030--Hb_000281_120 Hb_003651_030 Hb_003651_030 Hb_003573_030--Hb_003651_030 Hb_003573_030--Hb_000210_030 Hb_003573_030--Hb_000530_040 Hb_000069_440 Hb_000069_440 Hb_004411_010--Hb_000069_440 Hb_016371_010 Hb_016371_010 Hb_004411_010--Hb_016371_010 Hb_000282_020 Hb_000282_020 Hb_004411_010--Hb_000282_020 Hb_004411_010--Hb_007853_030 Hb_007681_010 Hb_007681_010 Hb_007853_030--Hb_007681_010 Hb_001166_010 Hb_001166_010 Hb_007853_030--Hb_001166_010 Hb_002042_090 Hb_002042_090 Hb_007853_030--Hb_002042_090 Hb_007853_030--Hb_000069_440 Hb_000172_660 Hb_000172_660 Hb_007853_030--Hb_000172_660 Hb_000530_040--Hb_001424_010 Hb_000530_040--Hb_001975_120 Hb_078954_030 Hb_078954_030 Hb_000530_040--Hb_078954_030 Hb_000262_090 Hb_000262_090 Hb_000210_030--Hb_000262_090 Hb_002818_110 Hb_002818_110 Hb_000210_030--Hb_002818_110 Hb_001675_090 Hb_001675_090 Hb_000210_030--Hb_001675_090 Hb_000821_030 Hb_000821_030 Hb_000210_030--Hb_000821_030 Hb_006573_110 Hb_006573_110 Hb_000210_030--Hb_006573_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.393746 8.4115 2.55578 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 6.1626

CAGE analysis