Hb_001675_090

Information

Type -
Description -
Location Contig1675: 63137-63954
Sequence    

Annotation

kegg
ID rcu:RCOM_1493780
description Photosystem I reaction center subunit VI, chloroplast precursor, putative
nr
ID XP_002516025.1
description Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O04006
description Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris GN=PSAH PE=2 SV=1
trembl
ID B9RQK6
description Photosystem I reaction center subunit VI, chloroplast, putative OS=Ricinus communis GN=RCOM_1493780 PE=4 SV=1
Gene Ontology
ID GO:0009538
description photosystem i reaction center subunit vi- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15512: 63443-64074 , PASA_asmbl_15513: 63393-64022
cDNA
(Sanger)
(ID:Location)		 009_G06.ab1: 63081-63924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_090 0.0 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
2 Hb_000719_030 0.0367990198 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
3 Hb_005345_020 0.0372129376 - - Root phototropism protein, putative [Ricinus communis]
4 Hb_002818_110 0.0424491583 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
5 Hb_000210_030 0.0435672518 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
6 Hb_000061_010 0.0496244883 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009476_030 0.0523591536 - - fatty acid desaturase [Manihot esculenta]
8 Hb_146225_020 0.0531730873 - - chlorophyll A/B binding protein, putative [Ricinus communis]
9 Hb_001975_120 0.0558473027 - - chlorophyll a/b binding protein type II [Glycine max]
10 Hb_003573_030 0.0563262646 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
11 Hb_001135_310 0.0571470656 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
12 Hb_001571_100 0.0600034359 - - chlorophyll A-B binding family protein [Populus trichocarpa]
13 Hb_002042_090 0.0625716464 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
14 Hb_002743_010 0.064062484 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000915_210 0.0653068757 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001205_140 0.0663434952 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
17 Hb_001343_030 0.0681440457 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
18 Hb_041433_010 0.0692434154 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_013726_060 0.0694284155 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
20 Hb_000018_110 0.0704172491 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]

Gene co-expression network

sample Hb_001675_090 Hb_001675_090 Hb_000719_030 Hb_000719_030 Hb_001675_090--Hb_000719_030 Hb_005345_020 Hb_005345_020 Hb_001675_090--Hb_005345_020 Hb_002818_110 Hb_002818_110 Hb_001675_090--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_001675_090--Hb_000210_030 Hb_000061_010 Hb_000061_010 Hb_001675_090--Hb_000061_010 Hb_009476_030 Hb_009476_030 Hb_001675_090--Hb_009476_030 Hb_146225_020 Hb_146225_020 Hb_000719_030--Hb_146225_020 Hb_001135_310 Hb_001135_310 Hb_000719_030--Hb_001135_310 Hb_000719_030--Hb_002818_110 Hb_013726_060 Hb_013726_060 Hb_000719_030--Hb_013726_060 Hb_001571_100 Hb_001571_100 Hb_000719_030--Hb_001571_100 Hb_005345_020--Hb_009476_030 Hb_041433_010 Hb_041433_010 Hb_005345_020--Hb_041433_010 Hb_005345_020--Hb_001571_100 Hb_001975_120 Hb_001975_120 Hb_005345_020--Hb_001975_120 Hb_001789_220 Hb_001789_220 Hb_005345_020--Hb_001789_220 Hb_002818_110--Hb_000061_010 Hb_002818_110--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_002818_110--Hb_006573_110 Hb_008013_020 Hb_008013_020 Hb_002818_110--Hb_008013_020 Hb_000262_090 Hb_000262_090 Hb_000210_030--Hb_000262_090 Hb_003573_030 Hb_003573_030 Hb_000210_030--Hb_003573_030 Hb_000821_030 Hb_000821_030 Hb_000210_030--Hb_000821_030 Hb_000210_030--Hb_006573_110 Hb_000061_010--Hb_000210_030 Hb_000061_010--Hb_006573_110 Hb_000018_110 Hb_000018_110 Hb_000061_010--Hb_000018_110 Hb_000061_010--Hb_000262_090 Hb_002042_090 Hb_002042_090 Hb_009476_030--Hb_002042_090 Hb_009476_030--Hb_001975_120 Hb_009476_030--Hb_041433_010 Hb_009476_030--Hb_001789_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.146304 16.744 632.424 198.553 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.690578 0.271209 0.221935 3.21162 593.872

CAGE analysis