Hb_000719_030

Information

Type -
Description -
Location Contig719: 109110-111127
Sequence    

Annotation

kegg
ID rcu:RCOM_1426230
description Photosystem I reaction center subunit III, chloroplast precursor, putative
nr
ID XP_002516419.1
description Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SHE8
description Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1
trembl
ID B9RRQ0
description Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus communis GN=RCOM_1426230 PE=4 SV=1
Gene Ontology
ID GO:0009534
description photosystem i reaction center subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55535: 109049-111069
cDNA
(Sanger)
(ID:Location)		 018_J12.ab1: 109078-109744 , 020_L18.ab1: 109077-109845 , 024_E22.ab1: 109077-109806 , 042_O17.ab1: 109077-109798

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000719_030 0.0 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
2 Hb_146225_020 0.0206804578 - - chlorophyll A/B binding protein, putative [Ricinus communis]
3 Hb_001135_310 0.031228419 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
4 Hb_001675_090 0.0367990198 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
5 Hb_002818_110 0.0487733551 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
6 Hb_013726_060 0.0504558256 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
7 Hb_001571_100 0.0512436505 - - chlorophyll A-B binding family protein [Populus trichocarpa]
8 Hb_002743_010 0.0543606764 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005345_020 0.0548864528 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_005280_020 0.0601429623 - - glycine cleavage system h protein, putative [Ricinus communis]
11 Hb_000061_010 0.0622692714 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000915_210 0.0633126947 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000512_120 0.0656281971 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
14 Hb_001975_120 0.0667858358 - - chlorophyll a/b binding protein type II [Glycine max]
15 Hb_014056_020 0.0672288164 - - zinc finger protein, putative [Ricinus communis]
16 Hb_008195_070 0.0672676969 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_001717_060 0.068310467 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
18 Hb_000210_030 0.0699376464 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
19 Hb_000531_100 0.0706108072 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
20 Hb_000333_010 0.0718602411 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]

Gene co-expression network

sample Hb_000719_030 Hb_000719_030 Hb_146225_020 Hb_146225_020 Hb_000719_030--Hb_146225_020 Hb_001135_310 Hb_001135_310 Hb_000719_030--Hb_001135_310 Hb_001675_090 Hb_001675_090 Hb_000719_030--Hb_001675_090 Hb_002818_110 Hb_002818_110 Hb_000719_030--Hb_002818_110 Hb_013726_060 Hb_013726_060 Hb_000719_030--Hb_013726_060 Hb_001571_100 Hb_001571_100 Hb_000719_030--Hb_001571_100 Hb_146225_020--Hb_001135_310 Hb_146225_020--Hb_013726_060 Hb_146225_020--Hb_001675_090 Hb_000531_100 Hb_000531_100 Hb_146225_020--Hb_000531_100 Hb_146225_020--Hb_001571_100 Hb_005280_020 Hb_005280_020 Hb_001135_310--Hb_005280_020 Hb_002743_010 Hb_002743_010 Hb_001135_310--Hb_002743_010 Hb_001135_310--Hb_002818_110 Hb_000915_210 Hb_000915_210 Hb_001135_310--Hb_000915_210 Hb_005345_020 Hb_005345_020 Hb_001675_090--Hb_005345_020 Hb_001675_090--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_001675_090--Hb_000210_030 Hb_000061_010 Hb_000061_010 Hb_001675_090--Hb_000061_010 Hb_009476_030 Hb_009476_030 Hb_001675_090--Hb_009476_030 Hb_002818_110--Hb_000061_010 Hb_002818_110--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_002818_110--Hb_006573_110 Hb_008013_020 Hb_008013_020 Hb_002818_110--Hb_008013_020 Hb_013726_060--Hb_000531_100 Hb_001717_060 Hb_001717_060 Hb_013726_060--Hb_001717_060 Hb_001766_160 Hb_001766_160 Hb_013726_060--Hb_001766_160 Hb_002529_120 Hb_002529_120 Hb_013726_060--Hb_002529_120 Hb_001571_100--Hb_002743_010 Hb_002028_020 Hb_002028_020 Hb_001571_100--Hb_002028_020 Hb_001571_100--Hb_005345_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_041433_010 Hb_041433_010 Hb_001571_100--Hb_041433_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 17.9181 628.322 219.016 0 0.0219469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.51098 0.584596 0 2.90456 702.853

CAGE analysis