Hb_001717_060

Information

Type -
Description -
Location Contig1717: 62279-76072
Sequence    

Annotation

kegg
ID rcu:RCOM_1109430
description lipid binding protein, putative
nr
ID XP_012462453.1
description PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
swissprot
ID Q9LZH5
description Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1
trembl
ID A0A0D2VK05
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G256100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16075: 62148-76119 , PASA_asmbl_16076: 62146-75659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001717_060 0.0 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
2 Hb_003038_060 0.0503417185 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
3 Hb_005754_050 0.0550100655 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
4 Hb_000531_100 0.0565296639 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
5 Hb_005280_020 0.0573925604 - - glycine cleavage system h protein, putative [Ricinus communis]
6 Hb_013726_060 0.0590857253 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
7 Hb_002818_110 0.0623677456 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
8 Hb_000625_080 0.0623813084 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_001135_310 0.0624627478 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
10 Hb_000230_420 0.0640022613 - - GS [Hevea brasiliensis subsp. brasiliensis]
11 Hb_010288_070 0.0641151103 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
12 Hb_146225_020 0.0664607093 - - chlorophyll A/B binding protein, putative [Ricinus communis]
13 Hb_003050_380 0.0677854967 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
14 Hb_000719_030 0.068310467 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
15 Hb_000510_180 0.0687188581 - - unknown [Lotus japonicus]
16 Hb_002304_030 0.0688344693 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
17 Hb_009193_020 0.0691606827 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
18 Hb_005888_020 0.0697195059 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
19 Hb_001170_020 0.0707553654 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003032_080 0.0720499203 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001717_060 Hb_001717_060 Hb_003038_060 Hb_003038_060 Hb_001717_060--Hb_003038_060 Hb_005754_050 Hb_005754_050 Hb_001717_060--Hb_005754_050 Hb_000531_100 Hb_000531_100 Hb_001717_060--Hb_000531_100 Hb_005280_020 Hb_005280_020 Hb_001717_060--Hb_005280_020 Hb_013726_060 Hb_013726_060 Hb_001717_060--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_001717_060--Hb_002818_110 Hb_000230_420 Hb_000230_420 Hb_003038_060--Hb_000230_420 Hb_001862_040 Hb_001862_040 Hb_003038_060--Hb_001862_040 Hb_013405_110 Hb_013405_110 Hb_003038_060--Hb_013405_110 Hb_002785_040 Hb_002785_040 Hb_003038_060--Hb_002785_040 Hb_003038_060--Hb_000531_100 Hb_001170_020 Hb_001170_020 Hb_005754_050--Hb_001170_020 Hb_003050_380 Hb_003050_380 Hb_005754_050--Hb_003050_380 Hb_005888_020 Hb_005888_020 Hb_005754_050--Hb_005888_020 Hb_002304_030 Hb_002304_030 Hb_005754_050--Hb_002304_030 Hb_010288_070 Hb_010288_070 Hb_005754_050--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_005754_050--Hb_000977_250 Hb_000531_100--Hb_013726_060 Hb_001292_030 Hb_001292_030 Hb_000531_100--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_000531_100--Hb_002529_120 Hb_000531_100--Hb_000230_420 Hb_001322_120 Hb_001322_120 Hb_000531_100--Hb_001322_120 Hb_005276_080 Hb_005276_080 Hb_000531_100--Hb_005276_080 Hb_074312_010 Hb_074312_010 Hb_005280_020--Hb_074312_010 Hb_001135_310 Hb_001135_310 Hb_005280_020--Hb_001135_310 Hb_005280_020--Hb_010288_070 Hb_005280_020--Hb_002304_030 Hb_005610_070 Hb_005610_070 Hb_005280_020--Hb_005610_070 Hb_007187_010 Hb_007187_010 Hb_005280_020--Hb_007187_010 Hb_146225_020 Hb_146225_020 Hb_013726_060--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_013726_060--Hb_000719_030 Hb_001766_160 Hb_001766_160 Hb_013726_060--Hb_001766_160 Hb_013726_060--Hb_002529_120 Hb_000061_010 Hb_000061_010 Hb_002818_110--Hb_000061_010 Hb_000210_030 Hb_000210_030 Hb_002818_110--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_002818_110--Hb_006573_110 Hb_001675_090 Hb_001675_090 Hb_002818_110--Hb_001675_090 Hb_008013_020 Hb_008013_020 Hb_002818_110--Hb_008013_020 Hb_002818_110--Hb_000719_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153104 1.57379 96.0749 25.6355 0.0898338 0.0944438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.23927 123.879

CAGE analysis