Hb_000531_100

Information

Type -
Description -
Location Contig531: 165581-167119
Sequence    

Annotation

kegg
ID rcu:RCOM_1426230
description Photosystem I reaction center subunit III, chloroplast precursor, putative
nr
ID XP_002516419.1
description Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SHE8
description Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1
trembl
ID B9RRQ0
description Photosystem I reaction center subunit III, chloroplast, putative OS=Ricinus communis GN=RCOM_1426230 PE=4 SV=1
Gene Ontology
ID GO:0009538
description photosystem i reaction center subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47395: 165678-167355
cDNA
(Sanger)
(ID:Location)		 047_F21.ab1: 166547-167355

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000531_100 0.0 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
2 Hb_013726_060 0.0374348278 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
3 Hb_001292_030 0.048185326 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
4 Hb_002529_120 0.0485488354 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
5 Hb_000230_420 0.0489510204 - - GS [Hevea brasiliensis subsp. brasiliensis]
6 Hb_001322_120 0.051678496 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_005276_080 0.0552563451 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
8 Hb_001766_160 0.0552706243 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
9 Hb_001717_060 0.0565296639 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
10 Hb_146225_020 0.0583781641 - - chlorophyll A/B binding protein, putative [Ricinus communis]
11 Hb_002785_030 0.0601244501 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
12 Hb_000589_340 0.0636219389 - - unknown [Populus trichocarpa x Populus deltoides]
13 Hb_001006_040 0.0659976228 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
14 Hb_001751_050 0.0661914424 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
15 Hb_003038_060 0.0666064867 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
16 Hb_000139_310 0.0673615828 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
17 Hb_117807_020 0.067870906 - - methyltransferase, putative [Ricinus communis]
18 Hb_000719_030 0.0706108072 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
19 Hb_005649_060 0.0709027993 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
20 Hb_006570_030 0.0713821165 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000531_100 Hb_000531_100 Hb_013726_060 Hb_013726_060 Hb_000531_100--Hb_013726_060 Hb_001292_030 Hb_001292_030 Hb_000531_100--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_000531_100--Hb_002529_120 Hb_000230_420 Hb_000230_420 Hb_000531_100--Hb_000230_420 Hb_001322_120 Hb_001322_120 Hb_000531_100--Hb_001322_120 Hb_005276_080 Hb_005276_080 Hb_000531_100--Hb_005276_080 Hb_146225_020 Hb_146225_020 Hb_013726_060--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_013726_060--Hb_000719_030 Hb_001717_060 Hb_001717_060 Hb_013726_060--Hb_001717_060 Hb_001766_160 Hb_001766_160 Hb_013726_060--Hb_001766_160 Hb_013726_060--Hb_002529_120 Hb_001006_040 Hb_001006_040 Hb_001292_030--Hb_001006_040 Hb_002785_030 Hb_002785_030 Hb_001292_030--Hb_002785_030 Hb_001292_030--Hb_001322_120 Hb_001292_030--Hb_000230_420 Hb_006570_030 Hb_006570_030 Hb_001292_030--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100 Hb_002529_120--Hb_002785_030 Hb_002529_120--Hb_001322_120 Hb_002529_120--Hb_001292_030 Hb_002529_120--Hb_001006_040 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_000083_180 Hb_000083_180 Hb_000230_420--Hb_000083_180 Hb_001277_350 Hb_001277_350 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060 Hb_001322_120--Hb_002785_030 Hb_001322_120--Hb_006570_030 Hb_001322_120--Hb_001006_040 Hb_001322_120--Hb_001766_160 Hb_001006_160 Hb_001006_160 Hb_005276_080--Hb_001006_160 Hb_006665_020 Hb_006665_020 Hb_005276_080--Hb_006665_020 Hb_000450_050 Hb_000450_050 Hb_005276_080--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_005276_080--Hb_000589_340 Hb_000676_320 Hb_000676_320 Hb_005276_080--Hb_000676_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 43.4906 895.138 250.186 0 0.123509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.574954 0.251172 0 4.24367 1264.67

CAGE analysis