Hb_000676_320

Information

Type -
Description -
Location Contig676: 263878-266692
Sequence    

Annotation

kegg
ID vvi:100233014
description TM6; flowering-related B-class MADS-box protein
nr
ID AHH28312.1
description MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
swissprot
ID P23706
description Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1
trembl
ID A0A023JBI6
description MADS-box transcription factor (Fragment) OS=Clutia sp. DAV B80.252/F1980.8371 PE=2 SV=1
Gene Ontology
ID GO:0005634
description mads-domain transcription partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_320 0.0 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
2 Hb_000083_180 0.0611394556 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
3 Hb_005276_080 0.0623088798 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
4 Hb_009193_020 0.0662617023 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
5 Hb_001006_160 0.0696454062 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000450_050 0.0822844905 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
7 Hb_003020_120 0.0827861962 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
8 Hb_004525_010 0.0845805032 - - late embryogenesis abundant, putative [Ricinus communis]
9 Hb_006665_020 0.0856792626 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
10 Hb_117807_020 0.085907738 - - methyltransferase, putative [Ricinus communis]
11 Hb_000531_100 0.0865416093 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
12 Hb_003038_060 0.086640981 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
13 Hb_000230_420 0.0873832152 - - GS [Hevea brasiliensis subsp. brasiliensis]
14 Hb_001717_060 0.0874243898 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
15 Hb_002785_040 0.088258124 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
16 Hb_002592_040 0.0887271335 - - ACC oxidase 3 [Hevea brasiliensis]
17 Hb_013405_110 0.0892673619 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_003747_090 0.0909902922 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_003847_070 0.0930750158 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
20 Hb_000948_240 0.0933621837 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000676_320 Hb_000676_320 Hb_000083_180 Hb_000083_180 Hb_000676_320--Hb_000083_180 Hb_005276_080 Hb_005276_080 Hb_000676_320--Hb_005276_080 Hb_009193_020 Hb_009193_020 Hb_000676_320--Hb_009193_020 Hb_001006_160 Hb_001006_160 Hb_000676_320--Hb_001006_160 Hb_000450_050 Hb_000450_050 Hb_000676_320--Hb_000450_050 Hb_003020_120 Hb_003020_120 Hb_000676_320--Hb_003020_120 Hb_000230_420 Hb_000230_420 Hb_000083_180--Hb_000230_420 Hb_000083_180--Hb_003020_120 Hb_000083_180--Hb_001006_160 Hb_117807_020 Hb_117807_020 Hb_000083_180--Hb_117807_020 Hb_000083_180--Hb_005276_080 Hb_005276_080--Hb_001006_160 Hb_006665_020 Hb_006665_020 Hb_005276_080--Hb_006665_020 Hb_000531_100 Hb_000531_100 Hb_005276_080--Hb_000531_100 Hb_005276_080--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_005276_080--Hb_000589_340 Hb_000625_080 Hb_000625_080 Hb_009193_020--Hb_000625_080 Hb_009193_020--Hb_005276_080 Hb_013726_060 Hb_013726_060 Hb_009193_020--Hb_013726_060 Hb_000510_180 Hb_000510_180 Hb_009193_020--Hb_000510_180 Hb_001717_060 Hb_001717_060 Hb_009193_020--Hb_001717_060 Hb_001006_160--Hb_006665_020 Hb_002785_040 Hb_002785_040 Hb_001006_160--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_001006_160--Hb_003747_090 Hb_002592_040 Hb_002592_040 Hb_001006_160--Hb_002592_040 Hb_000450_050--Hb_000589_340 Hb_001621_090 Hb_001621_090 Hb_000450_050--Hb_001621_090 Hb_005000_120 Hb_005000_120 Hb_000450_050--Hb_005000_120 Hb_000450_050--Hb_006665_020 Hb_008748_050 Hb_008748_050 Hb_000450_050--Hb_008748_050 Hb_013405_110 Hb_013405_110 Hb_003020_120--Hb_013405_110 Hb_004899_190 Hb_004899_190 Hb_003020_120--Hb_004899_190 Hb_000948_240 Hb_000948_240 Hb_003020_120--Hb_000948_240 Hb_003847_070 Hb_003847_070 Hb_003020_120--Hb_003847_070 Hb_003020_120--Hb_002592_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.134287 6.11534 1.47072 0 0.0442605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0452645 0.0827211 0.0365024 9.83124

CAGE analysis