Hb_000510_180

Information

Type -
Description -
Location Contig510: 171560-172198
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04520g
description POPTRDRAFT_830089; hypothetical protein
nr
ID AFK47170.1
description unknown [Lotus japonicus]
swissprot
ID Q41387
description Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1
trembl
ID I3T3S8
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0009507
description photosystem ii reaction center w chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46288: 166753-170680 , PASA_asmbl_46290: 171573-172276
cDNA
(Sanger)
(ID:Location)		 006_L06.ab1: 171573-172276 , 009_G02.ab1: 171573-172276

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_180 0.0 - - unknown [Lotus japonicus]
2 Hb_000625_080 0.0449386838 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
3 Hb_013726_060 0.0628543484 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
4 Hb_002818_110 0.0631499895 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
5 Hb_008013_020 0.0634124995 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
6 Hb_006573_110 0.0669344547 - - PREDICTED: uncharacterized protein PAM68-like [Jatropha curcas]
7 Hb_009193_020 0.0682336685 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
8 Hb_001717_060 0.0687188581 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
9 Hb_000531_100 0.0763099454 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
10 Hb_003921_020 0.0772705253 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
11 Hb_000937_010 0.0782780412 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000061_010 0.0787516513 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000719_030 0.0810433541 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
14 Hb_005618_030 0.0822970603 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
15 Hb_002529_120 0.0825710672 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
16 Hb_000210_030 0.0831142178 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
17 Hb_003651_030 0.0840406931 - - lyase, putative [Ricinus communis]
18 Hb_146225_020 0.0843470319 - - chlorophyll A/B binding protein, putative [Ricinus communis]
19 Hb_001675_090 0.0845346364 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
20 Hb_001287_020 0.0847376454 - - SulA [Manihot esculenta]

Gene co-expression network

sample Hb_000510_180 Hb_000510_180 Hb_000625_080 Hb_000625_080 Hb_000510_180--Hb_000625_080 Hb_013726_060 Hb_013726_060 Hb_000510_180--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_000510_180--Hb_002818_110 Hb_008013_020 Hb_008013_020 Hb_000510_180--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_000510_180--Hb_006573_110 Hb_009193_020 Hb_009193_020 Hb_000510_180--Hb_009193_020 Hb_000625_080--Hb_009193_020 Hb_000625_080--Hb_008013_020 Hb_001717_060 Hb_001717_060 Hb_000625_080--Hb_001717_060 Hb_000977_250 Hb_000977_250 Hb_000625_080--Hb_000977_250 Hb_000625_080--Hb_006573_110 Hb_000531_100 Hb_000531_100 Hb_013726_060--Hb_000531_100 Hb_146225_020 Hb_146225_020 Hb_013726_060--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_013726_060--Hb_000719_030 Hb_013726_060--Hb_001717_060 Hb_001766_160 Hb_001766_160 Hb_013726_060--Hb_001766_160 Hb_002529_120 Hb_002529_120 Hb_013726_060--Hb_002529_120 Hb_000061_010 Hb_000061_010 Hb_002818_110--Hb_000061_010 Hb_000210_030 Hb_000210_030 Hb_002818_110--Hb_000210_030 Hb_002818_110--Hb_006573_110 Hb_001675_090 Hb_001675_090 Hb_002818_110--Hb_001675_090 Hb_002818_110--Hb_008013_020 Hb_002818_110--Hb_000719_030 Hb_008013_020--Hb_006573_110 Hb_003921_020 Hb_003921_020 Hb_008013_020--Hb_003921_020 Hb_000262_090 Hb_000262_090 Hb_008013_020--Hb_000262_090 Hb_000821_030 Hb_000821_030 Hb_008013_020--Hb_000821_030 Hb_008013_020--Hb_000210_030 Hb_006573_110--Hb_003921_020 Hb_006573_110--Hb_000262_090 Hb_006573_110--Hb_000210_030 Hb_006573_110--Hb_000821_030 Hb_005276_080 Hb_005276_080 Hb_009193_020--Hb_005276_080 Hb_000676_320 Hb_000676_320 Hb_009193_020--Hb_000676_320 Hb_009193_020--Hb_013726_060 Hb_009193_020--Hb_001717_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100576 0.764701 25.0497 5.17927 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.184255 0 0.0760589 26.9892

CAGE analysis