Hb_001766_160

Information

Type -
Description -
Location Contig1766: 142184-144764
Sequence    

Annotation

kegg
ID rcu:RCOM_0767560
description Serine/threonine-protein kinase SAPK1, putative (EC:2.7.11.1)
nr
ID KHG23487.1
description Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
swissprot
ID A2YNT8
description Serine/threonine-protein kinase SAPK2 OS=Oryza sativa subsp. indica GN=SAPK2 PE=2 SV=2
trembl
ID A0A0B0PEX8
description Serine/threonine-protein kinase SAPK1 OS=Gossypium arboreum GN=F383_29691 PE=4 SV=1
Gene Ontology
ID GO:0005634
description serine threonine-protein kinase sapk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16942: 142185-144706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_160 0.0 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
2 Hb_001322_120 0.0485407637 - - nutrient reservoir, putative [Ricinus communis]
3 Hb_005649_060 0.0500059033 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
4 Hb_007477_060 0.0513820286 - - unknown [Medicago truncatula]
5 Hb_000531_100 0.0552706243 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
6 Hb_002871_180 0.0554996358 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
7 Hb_001006_150 0.058204373 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_005329_010 0.0585911333 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
9 Hb_013726_060 0.0593334919 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
10 Hb_001292_030 0.0596717576 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
11 Hb_006570_030 0.0611068366 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
12 Hb_004712_220 0.0621003219 - - conserved hypothetical protein [Ricinus communis]
13 Hb_117807_020 0.0629151421 - - methyltransferase, putative [Ricinus communis]
14 Hb_005211_080 0.0659193132 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
15 Hb_002529_120 0.0677067648 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
16 Hb_000139_310 0.0708203404 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
17 Hb_000088_230 0.0711935649 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
18 Hb_001751_050 0.072606424 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
19 Hb_002093_020 0.0742985497 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
20 Hb_002785_030 0.0745218091 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001766_160 Hb_001766_160 Hb_001322_120 Hb_001322_120 Hb_001766_160--Hb_001322_120 Hb_005649_060 Hb_005649_060 Hb_001766_160--Hb_005649_060 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_000531_100 Hb_000531_100 Hb_001766_160--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_001766_160--Hb_002871_180 Hb_001006_150 Hb_001006_150 Hb_001766_160--Hb_001006_150 Hb_001292_030 Hb_001292_030 Hb_001322_120--Hb_001292_030 Hb_002785_030 Hb_002785_030 Hb_001322_120--Hb_002785_030 Hb_006570_030 Hb_006570_030 Hb_001322_120--Hb_006570_030 Hb_002529_120 Hb_002529_120 Hb_001322_120--Hb_002529_120 Hb_001006_040 Hb_001006_040 Hb_001322_120--Hb_001006_040 Hb_005649_060--Hb_002871_180 Hb_000115_020 Hb_000115_020 Hb_005649_060--Hb_000115_020 Hb_004712_220 Hb_004712_220 Hb_005649_060--Hb_004712_220 Hb_000445_270 Hb_000445_270 Hb_005649_060--Hb_000445_270 Hb_005649_060--Hb_001006_150 Hb_000101_330 Hb_000101_330 Hb_007477_060--Hb_000101_330 Hb_007477_060--Hb_002871_180 Hb_007477_060--Hb_006570_030 Hb_003536_020 Hb_003536_020 Hb_007477_060--Hb_003536_020 Hb_007477_060--Hb_001322_120 Hb_013726_060 Hb_013726_060 Hb_000531_100--Hb_013726_060 Hb_000531_100--Hb_001292_030 Hb_000531_100--Hb_002529_120 Hb_000230_420 Hb_000230_420 Hb_000531_100--Hb_000230_420 Hb_000531_100--Hb_001322_120 Hb_005276_080 Hb_005276_080 Hb_000531_100--Hb_005276_080 Hb_002871_180--Hb_006570_030 Hb_002871_180--Hb_001322_120 Hb_002871_180--Hb_000101_330 Hb_000359_050 Hb_000359_050 Hb_001006_150--Hb_000359_050 Hb_005211_080 Hb_005211_080 Hb_001006_150--Hb_005211_080 Hb_001006_150--Hb_000445_270 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0303527 6.60126 74.159 20.4639 0 0.103844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389144 0.0437197 0 1.10974 103.796

CAGE analysis