Hb_005211_080

Information

Type -
Description -
Location Contig5211: 52053-53143
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13740g
description POPTRDRAFT_1090939; hypothetical protein
nr
ID XP_002315948.2
description hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
swissprot
ID P82412
description 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1
trembl
ID B9HWJ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13740g PE=4 SV=2
Gene Ontology
ID GO:0005840
description 30s ribosomal protein 3- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46751: 52069-53099
cDNA
(Sanger)
(ID:Location)		 018_E05.ab1: 52696-53078 , 024_I04.ab1: 52479-53032 , 030_J06.ab1: 52250-53076

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_080 0.0 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
2 Hb_000962_090 0.0443611449 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
3 Hb_000359_050 0.0496643047 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
4 Hb_001006_150 0.0506419226 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_005329_010 0.0511226133 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
6 Hb_004306_090 0.0638070897 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
7 Hb_001766_160 0.0659193132 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
8 Hb_001343_030 0.0677340234 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
9 Hb_000445_270 0.0717683279 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000460_040 0.0729985729 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
11 Hb_001338_120 0.0780277703 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
12 Hb_007597_030 0.0782322515 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000088_230 0.0786925236 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
14 Hb_001014_240 0.0788375642 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
15 Hb_000340_280 0.0803259056 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001159_050 0.0806373985 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
17 Hb_080922_010 0.0829116782 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_002272_210 0.0832684576 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
19 Hb_007477_060 0.084818421 - - unknown [Medicago truncatula]
20 Hb_001322_120 0.0868299244 - - nutrient reservoir, putative [Ricinus communis]

Gene co-expression network

sample Hb_005211_080 Hb_005211_080 Hb_000962_090 Hb_000962_090 Hb_005211_080--Hb_000962_090 Hb_000359_050 Hb_000359_050 Hb_005211_080--Hb_000359_050 Hb_001006_150 Hb_001006_150 Hb_005211_080--Hb_001006_150 Hb_005329_010 Hb_005329_010 Hb_005211_080--Hb_005329_010 Hb_004306_090 Hb_004306_090 Hb_005211_080--Hb_004306_090 Hb_001766_160 Hb_001766_160 Hb_005211_080--Hb_001766_160 Hb_000962_090--Hb_000359_050 Hb_001343_030 Hb_001343_030 Hb_000962_090--Hb_001343_030 Hb_001014_240 Hb_001014_240 Hb_000962_090--Hb_001014_240 Hb_000962_090--Hb_005329_010 Hb_000962_090--Hb_001006_150 Hb_000359_050--Hb_001006_150 Hb_000340_280 Hb_000340_280 Hb_000359_050--Hb_000340_280 Hb_000359_050--Hb_001014_240 Hb_003651_030 Hb_003651_030 Hb_000359_050--Hb_003651_030 Hb_000445_270 Hb_000445_270 Hb_001006_150--Hb_000445_270 Hb_001006_150--Hb_001766_160 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120 Hb_005329_010--Hb_001766_160 Hb_000088_230 Hb_000088_230 Hb_005329_010--Hb_000088_230 Hb_005329_010--Hb_001006_150 Hb_001322_120 Hb_001322_120 Hb_005329_010--Hb_001322_120 Hb_000460_040 Hb_000460_040 Hb_005329_010--Hb_000460_040 Hb_004306_090--Hb_005329_010 Hb_000544_070 Hb_000544_070 Hb_004306_090--Hb_000544_070 Hb_004306_090--Hb_000460_040 Hb_004306_090--Hb_001006_150 Hb_005433_020 Hb_005433_020 Hb_004306_090--Hb_005433_020 Hb_001766_160--Hb_001322_120 Hb_005649_060 Hb_005649_060 Hb_001766_160--Hb_005649_060 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_000531_100 Hb_000531_100 Hb_001766_160--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_001766_160--Hb_002871_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0657325 8.97305 79.4633 23.3685 0.0850342 0.183376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.501762 0.0789274 0.0726763 2.2214 89.2609

CAGE analysis