Hb_000088_230

Information

Type -
Description -
Location Contig88: 289180-290399
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11340g
description hypothetical protein
nr
ID XP_006376249.1
description hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
swissprot
ID Q9SMS0
description NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana GN=ndhT PE=1 SV=1
trembl
ID U5FVW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11340g PE=4 SV=1
Gene Ontology
ID GO:0009535
description dnaj homolog subfamily b member 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61398: 289505-290315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000088_230 0.0 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
2 Hb_001322_120 0.0579424779 - - nutrient reservoir, putative [Ricinus communis]
3 Hb_005329_010 0.0595619863 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
4 Hb_000460_040 0.060828595 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
5 Hb_002871_180 0.0662518109 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
6 Hb_002529_120 0.0670162959 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
7 Hb_001006_150 0.067183778 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_006570_030 0.0705031838 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
9 Hb_002368_060 0.0708237475 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001766_160 0.0711935649 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
11 Hb_000445_270 0.0716035708 - - ATP binding protein, putative [Ricinus communis]
12 Hb_002785_030 0.0726151733 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
13 Hb_007477_060 0.0757075233 - - unknown [Medicago truncatula]
14 Hb_005649_060 0.0758773924 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
15 Hb_004712_220 0.0778459114 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005211_080 0.0786925236 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
17 Hb_001159_050 0.0806703687 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
18 Hb_001338_120 0.0812310926 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
19 Hb_001006_040 0.0812605027 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
20 Hb_000025_700 0.0816844981 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]

Gene co-expression network

sample Hb_000088_230 Hb_000088_230 Hb_001322_120 Hb_001322_120 Hb_000088_230--Hb_001322_120 Hb_005329_010 Hb_005329_010 Hb_000088_230--Hb_005329_010 Hb_000460_040 Hb_000460_040 Hb_000088_230--Hb_000460_040 Hb_002871_180 Hb_002871_180 Hb_000088_230--Hb_002871_180 Hb_002529_120 Hb_002529_120 Hb_000088_230--Hb_002529_120 Hb_001006_150 Hb_001006_150 Hb_000088_230--Hb_001006_150 Hb_001292_030 Hb_001292_030 Hb_001322_120--Hb_001292_030 Hb_002785_030 Hb_002785_030 Hb_001322_120--Hb_002785_030 Hb_006570_030 Hb_006570_030 Hb_001322_120--Hb_006570_030 Hb_001322_120--Hb_002529_120 Hb_001006_040 Hb_001006_040 Hb_001322_120--Hb_001006_040 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_005211_080 Hb_005211_080 Hb_005329_010--Hb_005211_080 Hb_005329_010--Hb_001766_160 Hb_005329_010--Hb_001006_150 Hb_005329_010--Hb_001322_120 Hb_005329_010--Hb_000460_040 Hb_001699_140 Hb_001699_140 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_003494_090 Hb_003494_090 Hb_000460_040--Hb_003494_090 Hb_000460_040--Hb_005211_080 Hb_002871_180--Hb_007477_060 Hb_005649_060 Hb_005649_060 Hb_002871_180--Hb_005649_060 Hb_002871_180--Hb_006570_030 Hb_002871_180--Hb_001766_160 Hb_002871_180--Hb_001322_120 Hb_000101_330 Hb_000101_330 Hb_002871_180--Hb_000101_330 Hb_002529_120--Hb_002785_030 Hb_000531_100 Hb_000531_100 Hb_002529_120--Hb_000531_100 Hb_002529_120--Hb_001292_030 Hb_013726_060 Hb_013726_060 Hb_002529_120--Hb_013726_060 Hb_002529_120--Hb_001006_040 Hb_000359_050 Hb_000359_050 Hb_001006_150--Hb_000359_050 Hb_001006_150--Hb_005211_080 Hb_000445_270 Hb_000445_270 Hb_001006_150--Hb_000445_270 Hb_001006_150--Hb_001766_160 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.35921 48.8272 14.2462 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0546218 0.0429573 0 0.12111 61.2412

CAGE analysis