Hb_005649_060

Information

Type -
Description -
Location Contig5649: 36961-37717
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012522mg
description hypothetical protein
nr
ID XP_012084826.1
description PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K635
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19943 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chlororespiratory reduction 7 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48972: 36586-37767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005649_060 0.0 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
2 Hb_002871_180 0.04706537 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
3 Hb_001766_160 0.0500059033 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
4 Hb_000115_020 0.053568076 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
5 Hb_004712_220 0.05780533 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000445_270 0.0592832277 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001006_150 0.0631212202 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_001322_120 0.0661082228 - - nutrient reservoir, putative [Ricinus communis]
9 Hb_007477_060 0.0684333516 - - unknown [Medicago truncatula]
10 Hb_000531_100 0.0709027993 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
11 Hb_001751_050 0.0733553545 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
12 Hb_002529_120 0.0740236138 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
13 Hb_000088_230 0.0758773924 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
14 Hb_002093_020 0.0773078812 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
15 Hb_006570_030 0.079111052 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
16 Hb_000139_310 0.0793059369 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
17 Hb_080922_010 0.0798641231 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_013726_060 0.0803676629 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
19 Hb_117807_020 0.0804183815 - - methyltransferase, putative [Ricinus communis]
20 Hb_005329_010 0.0806385045 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]

Gene co-expression network

sample Hb_005649_060 Hb_005649_060 Hb_002871_180 Hb_002871_180 Hb_005649_060--Hb_002871_180 Hb_001766_160 Hb_001766_160 Hb_005649_060--Hb_001766_160 Hb_000115_020 Hb_000115_020 Hb_005649_060--Hb_000115_020 Hb_004712_220 Hb_004712_220 Hb_005649_060--Hb_004712_220 Hb_000445_270 Hb_000445_270 Hb_005649_060--Hb_000445_270 Hb_001006_150 Hb_001006_150 Hb_005649_060--Hb_001006_150 Hb_007477_060 Hb_007477_060 Hb_002871_180--Hb_007477_060 Hb_006570_030 Hb_006570_030 Hb_002871_180--Hb_006570_030 Hb_002871_180--Hb_001766_160 Hb_001322_120 Hb_001322_120 Hb_002871_180--Hb_001322_120 Hb_000101_330 Hb_000101_330 Hb_002871_180--Hb_000101_330 Hb_001766_160--Hb_001322_120 Hb_001766_160--Hb_007477_060 Hb_000531_100 Hb_000531_100 Hb_001766_160--Hb_000531_100 Hb_001766_160--Hb_001006_150 Hb_000937_010 Hb_000937_010 Hb_000115_020--Hb_000937_010 Hb_000809_190 Hb_000809_190 Hb_000115_020--Hb_000809_190 Hb_000115_020--Hb_000445_270 Hb_000115_020--Hb_004712_220 Hb_001751_050 Hb_001751_050 Hb_000115_020--Hb_001751_050 Hb_004712_220--Hb_001006_150 Hb_004712_220--Hb_001766_160 Hb_002529_120 Hb_002529_120 Hb_004712_220--Hb_002529_120 Hb_013726_060 Hb_013726_060 Hb_004712_220--Hb_013726_060 Hb_004712_220--Hb_000531_100 Hb_000445_270--Hb_001006_150 Hb_080922_010 Hb_080922_010 Hb_000445_270--Hb_080922_010 Hb_000359_050 Hb_000359_050 Hb_000445_270--Hb_000359_050 Hb_005329_010 Hb_005329_010 Hb_000445_270--Hb_005329_010 Hb_001864_050 Hb_001864_050 Hb_000445_270--Hb_001864_050 Hb_001006_150--Hb_000359_050 Hb_005211_080 Hb_005211_080 Hb_001006_150--Hb_005211_080 Hb_000340_280 Hb_000340_280 Hb_001006_150--Hb_000340_280 Hb_001338_120 Hb_001338_120 Hb_001006_150--Hb_001338_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.40342 65.162 12.4542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.137834 0 0 0.721334 87.9368

CAGE analysis