Hb_001864_050

Information

Type -
Description -
Location Contig1864: 43095-44455
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03390g
description POPTRDRAFT_834003; Oxygen-evolving enhancer protein 3-1
nr
ID AAV74404.1
description chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
swissprot
ID Q41932
description Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2
trembl
ID Q5PYQ5
description Chloroplast oxygen-evolving enhancer protein OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0009654
description oxygen-evolving enhancer protein 3- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18404: 43207-44378
cDNA
(Sanger)
(ID:Location)		 001_O22.ab1: 43261-44245 , 002_P14.ab1: 43241-44237 , 007_K21.ab1: 43241-44301 , 009_L12.ab1: 43261-44235 , 011_K01.ab1: 43241-44276 , 012_A22.ab1: 43241-44238 , 015_K09.ab1: 43265-43842 , 017_P13.ab1: 43261-44215 , 020_P03.ab1: 43261-44247 , 022_H03.ab1: 43269-43935 , 023_J07.ab1: 43207-44021 , 024_E02.ab1: 43267-43960 , 025_G14.ab1: 43261-44251 , 026_B21.ab1: 43261-44166 , 026_J13.ab1: 43261-44185 , 029_N19.ab1: 43241-43939 , 033_K10.ab1: 43266-44126 , 037_E19.ab1: 43261-44111 , 042_N21.ab1: 43261-44253 , 043_A18.ab1: 43261-44215 , 044_I10.ab1: 43261-44215 , 045_O19.ab1: 43261-44120 , 046_E23.ab1: 43261-44222 , 053_L17.ab1: 43204-44184

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001864_050 0.0 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
2 Hb_002805_200 0.0564206373 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
3 Hb_001338_120 0.0576282236 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]
4 Hb_001006_150 0.0649324689 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_000482_160 0.0654098683 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
6 Hb_000281_120 0.0683923144 - - protein binding protein, putative [Ricinus communis]
7 Hb_005305_140 0.0691321424 - - unknown [Populus trichocarpa]
8 Hb_078954_030 0.0703868783 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000445_270 0.0713883943 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000340_280 0.0716007062 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003651_030 0.0719796401 - - lyase, putative [Ricinus communis]
12 Hb_000359_050 0.0750841439 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
13 Hb_001662_090 0.0759547151 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004109_140 0.0802695539 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001916_110 0.0844645468 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
16 Hb_000386_010 0.0874745786 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001424_010 0.0877760746 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_000809_190 0.088308911 - - PREDICTED: myosin-6-like [Jatropha curcas]
19 Hb_000115_020 0.0915485217 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
20 Hb_000025_700 0.0926006781 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]

Gene co-expression network

sample Hb_001864_050 Hb_001864_050 Hb_002805_200 Hb_002805_200 Hb_001864_050--Hb_002805_200 Hb_001338_120 Hb_001338_120 Hb_001864_050--Hb_001338_120 Hb_001006_150 Hb_001006_150 Hb_001864_050--Hb_001006_150 Hb_000482_160 Hb_000482_160 Hb_001864_050--Hb_000482_160 Hb_000281_120 Hb_000281_120 Hb_001864_050--Hb_000281_120 Hb_005305_140 Hb_005305_140 Hb_001864_050--Hb_005305_140 Hb_002805_200--Hb_000281_120 Hb_003651_030 Hb_003651_030 Hb_002805_200--Hb_003651_030 Hb_000340_280 Hb_000340_280 Hb_002805_200--Hb_000340_280 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_001233_050 Hb_001233_050 Hb_002805_200--Hb_001233_050 Hb_001338_120--Hb_001006_150 Hb_005329_010 Hb_005329_010 Hb_001338_120--Hb_005329_010 Hb_000359_050 Hb_000359_050 Hb_001338_120--Hb_000359_050 Hb_001338_120--Hb_000281_120 Hb_000445_270 Hb_000445_270 Hb_001338_120--Hb_000445_270 Hb_001006_150--Hb_000359_050 Hb_005211_080 Hb_005211_080 Hb_001006_150--Hb_005211_080 Hb_001006_150--Hb_000445_270 Hb_001766_160 Hb_001766_160 Hb_001006_150--Hb_001766_160 Hb_001006_150--Hb_000340_280 Hb_000482_160--Hb_001338_120 Hb_000482_160--Hb_002805_200 Hb_000482_160--Hb_000281_120 Hb_000482_160--Hb_005305_140 Hb_000482_160--Hb_003651_030 Hb_000281_120--Hb_003651_030 Hb_003573_030 Hb_003573_030 Hb_000281_120--Hb_003573_030 Hb_000210_030 Hb_000210_030 Hb_000281_120--Hb_000210_030 Hb_000281_120--Hb_000340_280 Hb_003921_020 Hb_003921_020 Hb_000281_120--Hb_003921_020 Hb_004109_140 Hb_004109_140 Hb_005305_140--Hb_004109_140 Hb_000386_010 Hb_000386_010 Hb_005305_140--Hb_000386_010 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_000834_170 Hb_000834_170 Hb_005305_140--Hb_000834_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85865 128.279 1190.68 184.432 0.969542 1.52901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05859 0.466303 0.185535 4.69977 1057.25

CAGE analysis