Hb_002805_200

Information

Type -
Description -
Location Contig2805: 153384-157856
Sequence    

Annotation

kegg
ID pmum:103326783
description serine--glyoxylate aminotransferase
nr
ID XP_010277598.1
description PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
swissprot
ID Q56YA5
description Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2
trembl
ID A0A067KIN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08377 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine--glyoxylate aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29295: 153513-157569 , PASA_asmbl_29296: 153543-157906 , PASA_asmbl_29297: 154338-154678 , PASA_asmbl_29298: 155531-155827
cDNA
(Sanger)
(ID:Location)		 008_J13.ab1: 156885-157048 , 018_M04.ab1: 156885-157048 , 039_C14.ab1: 156885-157047 , 040_D14.ab1: 155305-157906

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_200 0.0 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
2 Hb_000281_120 0.0401895872 - - protein binding protein, putative [Ricinus communis]
3 Hb_003651_030 0.043043009 - - lyase, putative [Ricinus communis]
4 Hb_000340_280 0.0508088511 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001864_050 0.0564206373 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
6 Hb_078954_030 0.0579087116 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001233_050 0.0627407948 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]
8 Hb_003921_020 0.0652369831 - - hypothetical protein JCGZ_10628 [Jatropha curcas]
9 Hb_003573_030 0.0691810567 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
10 Hb_000359_050 0.0701653875 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
11 Hb_001424_010 0.0705138081 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_001916_110 0.0723551947 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
13 Hb_101133_030 0.0728440855 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
14 Hb_179129_010 0.0739855401 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
15 Hb_001662_090 0.0758311555 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000530_040 0.0762502336 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
17 Hb_000749_140 0.0767205231 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
18 Hb_001006_150 0.0778517038 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_000210_030 0.0819391967 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
20 Hb_016371_010 0.0827027603 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]

Gene co-expression network

sample Hb_002805_200 Hb_002805_200 Hb_000281_120 Hb_000281_120 Hb_002805_200--Hb_000281_120 Hb_003651_030 Hb_003651_030 Hb_002805_200--Hb_003651_030 Hb_000340_280 Hb_000340_280 Hb_002805_200--Hb_000340_280 Hb_001864_050 Hb_001864_050 Hb_002805_200--Hb_001864_050 Hb_078954_030 Hb_078954_030 Hb_002805_200--Hb_078954_030 Hb_001233_050 Hb_001233_050 Hb_002805_200--Hb_001233_050 Hb_000281_120--Hb_003651_030 Hb_003573_030 Hb_003573_030 Hb_000281_120--Hb_003573_030 Hb_000210_030 Hb_000210_030 Hb_000281_120--Hb_000210_030 Hb_000281_120--Hb_000340_280 Hb_003921_020 Hb_003921_020 Hb_000281_120--Hb_003921_020 Hb_003651_030--Hb_003573_030 Hb_003651_030--Hb_000210_030 Hb_003651_030--Hb_000340_280 Hb_000359_050 Hb_000359_050 Hb_003651_030--Hb_000359_050 Hb_000340_280--Hb_000359_050 Hb_101133_030 Hb_101133_030 Hb_000340_280--Hb_101133_030 Hb_001006_150 Hb_001006_150 Hb_000340_280--Hb_001006_150 Hb_001338_120 Hb_001338_120 Hb_001864_050--Hb_001338_120 Hb_001864_050--Hb_001006_150 Hb_000482_160 Hb_000482_160 Hb_001864_050--Hb_000482_160 Hb_001864_050--Hb_000281_120 Hb_005305_140 Hb_005305_140 Hb_001864_050--Hb_005305_140 Hb_001424_010 Hb_001424_010 Hb_078954_030--Hb_001424_010 Hb_179129_010 Hb_179129_010 Hb_078954_030--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_078954_030--Hb_004346_050 Hb_000025_700 Hb_000025_700 Hb_078954_030--Hb_000025_700 Hb_016371_010 Hb_016371_010 Hb_078954_030--Hb_016371_010 Hb_000530_040 Hb_000530_040 Hb_078954_030--Hb_000530_040 Hb_001942_060 Hb_001942_060 Hb_001233_050--Hb_001942_060 Hb_001233_050--Hb_000210_030 Hb_001233_050--Hb_101133_030 Hb_002078_280 Hb_002078_280 Hb_001233_050--Hb_002078_280 Hb_000821_030 Hb_000821_030 Hb_001233_050--Hb_000821_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0390346 39.3179 563.638 95.6547 0.0112271 0.0720527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.509912 0.260777 0 2.48476 421.426

CAGE analysis