Hb_004346_050

Information

Type -
Description -
Location Contig4346: 52768-59610
Sequence    

Annotation

kegg
ID rcu:RCOM_0422670
description ATP-binding cassette transporter, putative (EC:3.6.3.29)
nr
ID XP_012074259.1
description PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
swissprot
ID Q93YS4
description ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1
trembl
ID A0A067KIL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08715 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 22 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42430: 52925-58437
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004346_050 0.0 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
2 Hb_179129_010 0.0343374994 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
3 Hb_016371_010 0.0374288284 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
4 Hb_078954_030 0.0448120045 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000025_700 0.0573485373 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
6 Hb_001424_010 0.0578131525 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_048141_050 0.0624859116 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
8 Hb_022167_010 0.0728284509 - - Kinase, putative isoform 2 [Theobroma cacao]
9 Hb_000087_040 0.0750264711 - - Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]
10 Hb_004411_010 0.0756163279 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
11 Hb_000236_130 0.0771671027 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
12 Hb_000530_040 0.0776335165 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
13 Hb_000928_100 0.0816195468 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
14 Hb_000697_030 0.0821302539 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
15 Hb_002805_200 0.0833583252 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
16 Hb_000282_020 0.0843110246 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
17 Hb_005488_210 0.0874222975 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
18 Hb_003777_090 0.0923677097 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
19 Hb_000386_010 0.0929118367 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000281_120 0.093747805 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004346_050 Hb_004346_050 Hb_179129_010 Hb_179129_010 Hb_004346_050--Hb_179129_010 Hb_016371_010 Hb_016371_010 Hb_004346_050--Hb_016371_010 Hb_078954_030 Hb_078954_030 Hb_004346_050--Hb_078954_030 Hb_000025_700 Hb_000025_700 Hb_004346_050--Hb_000025_700 Hb_001424_010 Hb_001424_010 Hb_004346_050--Hb_001424_010 Hb_048141_050 Hb_048141_050 Hb_004346_050--Hb_048141_050 Hb_179129_010--Hb_016371_010 Hb_179129_010--Hb_078954_030 Hb_179129_010--Hb_001424_010 Hb_179129_010--Hb_000025_700 Hb_000530_040 Hb_000530_040 Hb_179129_010--Hb_000530_040 Hb_016371_010--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_016371_010--Hb_000697_030 Hb_016371_010--Hb_078954_030 Hb_004411_010 Hb_004411_010 Hb_016371_010--Hb_004411_010 Hb_078954_030--Hb_001424_010 Hb_078954_030--Hb_000025_700 Hb_078954_030--Hb_000530_040 Hb_000025_700--Hb_001424_010 Hb_001369_340 Hb_001369_340 Hb_000025_700--Hb_001369_340 Hb_000025_700--Hb_016371_010 Hb_001424_010--Hb_000530_040 Hb_001424_010--Hb_000697_030 Hb_048141_050--Hb_016371_010 Hb_048141_050--Hb_179129_010 Hb_048141_050--Hb_004411_010 Hb_048141_050--Hb_078954_030 Hb_000087_040 Hb_000087_040 Hb_048141_050--Hb_000087_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.27222 33.2326 8.20893 0 0.0189217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0153722 0 0 0.0623923 22.0443

CAGE analysis