Hb_000087_040

Information

Type -
Description -
Location Contig87: 99819-119072
Sequence    

Annotation

kegg
ID tcc:TCM_039616
description Autoinhibited Ca(2+)-ATPase 10 isoform 1
nr
ID XP_007014494.1
description Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]
swissprot
ID Q9SZR1
description Calcium-transporting ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=ACA10 PE=1 SV=2
trembl
ID A0A061GQJ4
description Calcium-transporting ATPase OS=Theobroma cacao GN=TCM_039616 PE=3 SV=1
Gene Ontology
ID GO:0016020
description calcium-transporting atpase plasma membrane-type-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000087_040 0.0 - - Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]
2 Hb_016371_010 0.0732205759 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_004411_010 0.0733382446 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
4 Hb_004346_050 0.0750264711 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
5 Hb_048141_050 0.0797992774 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
6 Hb_000005_060 0.0824151017 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
7 Hb_179129_010 0.0840208548 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
8 Hb_000282_020 0.0885238185 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
9 Hb_000069_220 0.0898977577 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
10 Hb_000530_040 0.0913541823 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
11 Hb_001424_010 0.0919999749 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_000697_030 0.0921879123 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
13 Hb_078954_030 0.0924332394 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000069_440 0.0953332953 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
15 Hb_007853_030 0.1020969509 - - structural molecule, putative [Ricinus communis]
16 Hb_022167_010 0.1054409146 - - Kinase, putative isoform 2 [Theobroma cacao]
17 Hb_003573_030 0.1055889254 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
18 Hb_023827_030 0.1079655105 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
19 Hb_002805_200 0.1104087417 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
20 Hb_005488_210 0.1114913956 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000087_040 Hb_000087_040 Hb_016371_010 Hb_016371_010 Hb_000087_040--Hb_016371_010 Hb_004411_010 Hb_004411_010 Hb_000087_040--Hb_004411_010 Hb_004346_050 Hb_004346_050 Hb_000087_040--Hb_004346_050 Hb_048141_050 Hb_048141_050 Hb_000087_040--Hb_048141_050 Hb_000005_060 Hb_000005_060 Hb_000087_040--Hb_000005_060 Hb_179129_010 Hb_179129_010 Hb_000087_040--Hb_179129_010 Hb_016371_010--Hb_004346_050 Hb_016371_010--Hb_179129_010 Hb_001424_010 Hb_001424_010 Hb_016371_010--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_016371_010--Hb_000697_030 Hb_078954_030 Hb_078954_030 Hb_016371_010--Hb_078954_030 Hb_016371_010--Hb_004411_010 Hb_000069_220 Hb_000069_220 Hb_004411_010--Hb_000069_220 Hb_000069_440 Hb_000069_440 Hb_004411_010--Hb_000069_440 Hb_004411_010--Hb_000697_030 Hb_000282_020 Hb_000282_020 Hb_004411_010--Hb_000282_020 Hb_007853_030 Hb_007853_030 Hb_004411_010--Hb_007853_030 Hb_004346_050--Hb_179129_010 Hb_004346_050--Hb_078954_030 Hb_000025_700 Hb_000025_700 Hb_004346_050--Hb_000025_700 Hb_004346_050--Hb_001424_010 Hb_004346_050--Hb_048141_050 Hb_048141_050--Hb_016371_010 Hb_048141_050--Hb_179129_010 Hb_048141_050--Hb_004411_010 Hb_048141_050--Hb_078954_030 Hb_001266_010 Hb_001266_010 Hb_000005_060--Hb_001266_010 Hb_000005_060--Hb_000282_020 Hb_000005_060--Hb_000069_440 Hb_023582_010 Hb_023582_010 Hb_000005_060--Hb_023582_010 Hb_023827_030 Hb_023827_030 Hb_000005_060--Hb_023827_030 Hb_000005_060--Hb_004411_010 Hb_179129_010--Hb_078954_030 Hb_179129_010--Hb_001424_010 Hb_179129_010--Hb_000025_700 Hb_000530_040 Hb_000530_040 Hb_179129_010--Hb_000530_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.141058 1.65946 0.436184 0 0.0245989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.983054

CAGE analysis