Hb_016371_010

Information

Type -
Description -
Location Contig16371: 8-1274
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_012072604.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID A0A067L2I2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01675 PE=4 SV=1
Gene Ontology
ID GO:0016301
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016371_010 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
2 Hb_004346_050 0.0374288284 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
3 Hb_179129_010 0.0399532575 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
4 Hb_001424_010 0.0487145625 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_000697_030 0.0516401291 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
6 Hb_078954_030 0.052082953 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004411_010 0.052377582 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
8 Hb_000530_040 0.0617855024 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
9 Hb_000025_700 0.062683787 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
10 Hb_048141_050 0.0658252801 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
11 Hb_000069_220 0.0689794118 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
12 Hb_000087_040 0.0732205759 - - Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]
13 Hb_003573_030 0.0736492627 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
14 Hb_000281_120 0.0814358522 - - protein binding protein, putative [Ricinus communis]
15 Hb_002805_200 0.0827027603 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
16 Hb_003651_030 0.0829257972 - - lyase, putative [Ricinus communis]
17 Hb_000282_020 0.0836241627 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
18 Hb_003038_230 0.0856044543 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
19 Hb_001975_120 0.0874637407 - - chlorophyll a/b binding protein type II [Glycine max]
20 Hb_000069_440 0.0880155711 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]

Gene co-expression network

sample Hb_016371_010 Hb_016371_010 Hb_004346_050 Hb_004346_050 Hb_016371_010--Hb_004346_050 Hb_179129_010 Hb_179129_010 Hb_016371_010--Hb_179129_010 Hb_001424_010 Hb_001424_010 Hb_016371_010--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_016371_010--Hb_000697_030 Hb_078954_030 Hb_078954_030 Hb_016371_010--Hb_078954_030 Hb_004411_010 Hb_004411_010 Hb_016371_010--Hb_004411_010 Hb_004346_050--Hb_179129_010 Hb_004346_050--Hb_078954_030 Hb_000025_700 Hb_000025_700 Hb_004346_050--Hb_000025_700 Hb_004346_050--Hb_001424_010 Hb_048141_050 Hb_048141_050 Hb_004346_050--Hb_048141_050 Hb_179129_010--Hb_078954_030 Hb_179129_010--Hb_001424_010 Hb_179129_010--Hb_000025_700 Hb_000530_040 Hb_000530_040 Hb_179129_010--Hb_000530_040 Hb_001424_010--Hb_000530_040 Hb_001424_010--Hb_078954_030 Hb_001424_010--Hb_000697_030 Hb_001424_010--Hb_000025_700 Hb_000069_220 Hb_000069_220 Hb_000697_030--Hb_000069_220 Hb_003573_030 Hb_003573_030 Hb_000697_030--Hb_003573_030 Hb_000697_030--Hb_000530_040 Hb_000697_030--Hb_004411_010 Hb_001975_120 Hb_001975_120 Hb_000697_030--Hb_001975_120 Hb_078954_030--Hb_000025_700 Hb_078954_030--Hb_000530_040 Hb_004411_010--Hb_000069_220 Hb_000069_440 Hb_000069_440 Hb_004411_010--Hb_000069_440 Hb_000282_020 Hb_000282_020 Hb_004411_010--Hb_000282_020 Hb_007853_030 Hb_007853_030 Hb_004411_010--Hb_007853_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0432656 0.396653 0.107679 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.283896

CAGE analysis