Hb_000025_700

Information

Type -
Description -
Location Contig25: 654663-658090
Sequence    

Annotation

kegg
ID rcu:RCOM_0063050
description serine-pyruvate aminotransferase, putative (EC:2.6.1.45)
nr
ID XP_010277598.1
description PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
swissprot
ID Q56YA5
description Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2
trembl
ID A0A067KIN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08377 PE=3 SV=1
Gene Ontology
ID GO:0003824
description serine--glyoxylate aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26165: 654790-658532 , PASA_asmbl_26166: 654832-657165
cDNA
(Sanger)
(ID:Location)		 005_K07.ab1: 656600-658526

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_700 0.0 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
2 Hb_078954_030 0.0508915827 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001424_010 0.0541882766 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_179129_010 0.0556480219 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
5 Hb_004346_050 0.0573485373 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
6 Hb_001369_340 0.0607511572 - - Peroxisomal membrane protein 11B [Theobroma cacao]
7 Hb_016371_010 0.062683787 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
8 Hb_001159_050 0.0678443542 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]
9 Hb_004117_380 0.0750951843 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
10 Hb_000530_040 0.0790323842 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
11 Hb_000155_020 0.0801859884 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000088_230 0.0816844981 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
13 Hb_004017_030 0.0862288952 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
14 Hb_000697_030 0.0876263715 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
15 Hb_000359_050 0.0881790179 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
16 Hb_004109_140 0.0891323168 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000483_470 0.0906076616 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
18 Hb_007462_020 0.0910500275 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
19 Hb_001864_050 0.0926006781 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
20 Hb_000962_090 0.0930550875 - - omega-6 fatty acid desaturase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000025_700 Hb_000025_700 Hb_078954_030 Hb_078954_030 Hb_000025_700--Hb_078954_030 Hb_001424_010 Hb_001424_010 Hb_000025_700--Hb_001424_010 Hb_179129_010 Hb_179129_010 Hb_000025_700--Hb_179129_010 Hb_004346_050 Hb_004346_050 Hb_000025_700--Hb_004346_050 Hb_001369_340 Hb_001369_340 Hb_000025_700--Hb_001369_340 Hb_016371_010 Hb_016371_010 Hb_000025_700--Hb_016371_010 Hb_078954_030--Hb_001424_010 Hb_078954_030--Hb_179129_010 Hb_078954_030--Hb_004346_050 Hb_078954_030--Hb_016371_010 Hb_000530_040 Hb_000530_040 Hb_078954_030--Hb_000530_040 Hb_001424_010--Hb_000530_040 Hb_001424_010--Hb_179129_010 Hb_000697_030 Hb_000697_030 Hb_001424_010--Hb_000697_030 Hb_001424_010--Hb_016371_010 Hb_179129_010--Hb_004346_050 Hb_179129_010--Hb_016371_010 Hb_179129_010--Hb_000530_040 Hb_004346_050--Hb_016371_010 Hb_004346_050--Hb_001424_010 Hb_048141_050 Hb_048141_050 Hb_004346_050--Hb_048141_050 Hb_003767_060 Hb_003767_060 Hb_001369_340--Hb_003767_060 Hb_004117_380 Hb_004117_380 Hb_001369_340--Hb_004117_380 Hb_004017_030 Hb_004017_030 Hb_001369_340--Hb_004017_030 Hb_003209_150 Hb_003209_150 Hb_001369_340--Hb_003209_150 Hb_007462_020 Hb_007462_020 Hb_001369_340--Hb_007462_020 Hb_016371_010--Hb_000697_030 Hb_004411_010 Hb_004411_010 Hb_016371_010--Hb_004411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0300893 45.8213 268.882 77.6 0.0382128 0.0289699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.478715 0.25111 0 0.713653 232.644

CAGE analysis