Hb_048141_050

Information

Type -
Description -
Location Contig48141: 72130-77888
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009153mg
description hypothetical protein
nr
ID XP_007202329.1
description hypothetical protein PRUPE_ppa009153mg [Prunus persica]
swissprot
ID Q5HZL9
description Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Xenopus laevis GN=hdhd3 PE=2 SV=1
trembl
ID M5W2P8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009153mg PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44758: 72069-77709
cDNA
(Sanger)
(ID:Location)		 019_H21.ab1: 72077-75935 , 028_C16.ab1: 72082-75796

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048141_050 0.0 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
2 Hb_004346_050 0.0624859116 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
3 Hb_016371_010 0.0658252801 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
4 Hb_179129_010 0.0701094508 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
5 Hb_004411_010 0.0759187349 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
6 Hb_078954_030 0.0784060403 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000087_040 0.0797992774 - - Autoinhibited Ca(2+)-ATPase 10 isoform 1 [Theobroma cacao]
8 Hb_000282_020 0.0812203552 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
9 Hb_001424_010 0.0834385767 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_110266_010 0.0837698206 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
11 Hb_002007_120 0.0840674374 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
12 Hb_000530_040 0.084935449 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1 [Jatropha curcas]
13 Hb_000069_440 0.0893803449 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
14 Hb_002805_200 0.0914316102 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
15 Hb_000069_220 0.09221431 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF023 [Jatropha curcas]
16 Hb_022167_010 0.0923422708 - - Kinase, putative isoform 2 [Theobroma cacao]
17 Hb_000928_100 0.0929243002 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
18 Hb_000697_030 0.0934313624 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Pyrus x bretschneideri]
19 Hb_002499_050 0.0943266401 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000025_700 0.0964383768 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]

Gene co-expression network

sample Hb_048141_050 Hb_048141_050 Hb_004346_050 Hb_004346_050 Hb_048141_050--Hb_004346_050 Hb_016371_010 Hb_016371_010 Hb_048141_050--Hb_016371_010 Hb_179129_010 Hb_179129_010 Hb_048141_050--Hb_179129_010 Hb_004411_010 Hb_004411_010 Hb_048141_050--Hb_004411_010 Hb_078954_030 Hb_078954_030 Hb_048141_050--Hb_078954_030 Hb_000087_040 Hb_000087_040 Hb_048141_050--Hb_000087_040 Hb_004346_050--Hb_179129_010 Hb_004346_050--Hb_016371_010 Hb_004346_050--Hb_078954_030 Hb_000025_700 Hb_000025_700 Hb_004346_050--Hb_000025_700 Hb_001424_010 Hb_001424_010 Hb_004346_050--Hb_001424_010 Hb_016371_010--Hb_179129_010 Hb_016371_010--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_016371_010--Hb_000697_030 Hb_016371_010--Hb_078954_030 Hb_016371_010--Hb_004411_010 Hb_179129_010--Hb_078954_030 Hb_179129_010--Hb_001424_010 Hb_179129_010--Hb_000025_700 Hb_000530_040 Hb_000530_040 Hb_179129_010--Hb_000530_040 Hb_000069_220 Hb_000069_220 Hb_004411_010--Hb_000069_220 Hb_000069_440 Hb_000069_440 Hb_004411_010--Hb_000069_440 Hb_004411_010--Hb_000697_030 Hb_000282_020 Hb_000282_020 Hb_004411_010--Hb_000282_020 Hb_007853_030 Hb_007853_030 Hb_004411_010--Hb_007853_030 Hb_078954_030--Hb_001424_010 Hb_078954_030--Hb_000025_700 Hb_078954_030--Hb_000530_040 Hb_000087_040--Hb_016371_010 Hb_000087_040--Hb_004411_010 Hb_000087_040--Hb_004346_050 Hb_000005_060 Hb_000005_060 Hb_000087_040--Hb_000005_060 Hb_000087_040--Hb_179129_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.098251 11.1165 123.332 28.9332 0.0320802 0.0178282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.820877 0.184494 0.057291 0.0123107 71.4586

CAGE analysis