Hb_023582_010

Information

Type -
Description -
Location Contig23582: 16589-17110
Sequence    

Annotation

kegg
ID rcu:RCOM_1246940
description hypothetical protein
nr
ID XP_002527720.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LZ60
description Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana GN=SMR3 PE=2 SV=1
trembl
ID B9SP01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1246940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023582_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019053_040 0.0356852393 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000722_030 0.0563239444 - - putative plant disease resistance family protein [Populus trichocarpa]
4 Hb_000282_020 0.0652517215 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
5 Hb_016297_010 0.0684995725 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
6 Hb_000005_060 0.0731664128 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
7 Hb_105148_020 0.0736607168 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
8 Hb_023827_030 0.0752053487 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
9 Hb_002066_100 0.0763856502 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
10 Hb_001266_010 0.0785968318 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
11 Hb_002518_040 0.0857658984 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
12 Hb_006620_030 0.0864108774 - - nitrate reductase, putative [Ricinus communis]
13 Hb_001258_130 0.0878336677 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
14 Hb_000069_440 0.0900257339 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
15 Hb_001166_010 0.0913591094 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
16 Hb_003101_020 0.0924552358 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
17 Hb_007545_070 0.0936743185 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
18 Hb_027684_010 0.0957809574 - - hypothetical protein RCOM_0504250 [Ricinus communis]
19 Hb_021443_060 0.096057978 - - PTH-1 family protein [Populus trichocarpa]
20 Hb_000312_100 0.0981986196 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_023582_010 Hb_023582_010 Hb_019053_040 Hb_019053_040 Hb_023582_010--Hb_019053_040 Hb_000722_030 Hb_000722_030 Hb_023582_010--Hb_000722_030 Hb_000282_020 Hb_000282_020 Hb_023582_010--Hb_000282_020 Hb_016297_010 Hb_016297_010 Hb_023582_010--Hb_016297_010 Hb_000005_060 Hb_000005_060 Hb_023582_010--Hb_000005_060 Hb_105148_020 Hb_105148_020 Hb_023582_010--Hb_105148_020 Hb_019053_040--Hb_000282_020 Hb_001166_010 Hb_001166_010 Hb_019053_040--Hb_001166_010 Hb_019053_040--Hb_105148_020 Hb_023827_030 Hb_023827_030 Hb_019053_040--Hb_023827_030 Hb_002066_100 Hb_002066_100 Hb_019053_040--Hb_002066_100 Hb_002518_040 Hb_002518_040 Hb_000722_030--Hb_002518_040 Hb_000722_030--Hb_002066_100 Hb_000722_030--Hb_016297_010 Hb_000722_030--Hb_019053_040 Hb_027684_010 Hb_027684_010 Hb_000722_030--Hb_027684_010 Hb_000069_440 Hb_000069_440 Hb_000282_020--Hb_000069_440 Hb_004411_010 Hb_004411_010 Hb_000282_020--Hb_004411_010 Hb_000282_020--Hb_000005_060 Hb_000282_020--Hb_023827_030 Hb_016297_010--Hb_023827_030 Hb_016297_010--Hb_019053_040 Hb_001258_130 Hb_001258_130 Hb_016297_010--Hb_001258_130 Hb_016297_010--Hb_105148_020 Hb_001266_010 Hb_001266_010 Hb_000005_060--Hb_001266_010 Hb_000005_060--Hb_000069_440 Hb_000005_060--Hb_023827_030 Hb_000005_060--Hb_004411_010 Hb_006620_030 Hb_006620_030 Hb_105148_020--Hb_006620_030 Hb_105148_020--Hb_001166_010 Hb_105148_020--Hb_001258_130 Hb_105148_020--Hb_023827_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.39514 5.9312 2.42716 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.162902 3.15423

CAGE analysis