Hb_001166_010

Information

Type -
Description -
Location Contig1166: 1360-2634
Sequence    

Annotation

kegg
ID rcu:RCOM_1255980
description S-locus-specific glycoprotein S13 precursor, putative
nr
ID XP_002525781.1
description S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
swissprot
ID O81832
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4
trembl
ID B9SIG2
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1255980 PE=3 SV=1
Gene Ontology
ID GO:0048544
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05107: 1719-1859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001166_010 0.0 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
2 Hb_007853_030 0.0473842632 - - structural molecule, putative [Ricinus communis]
3 Hb_000144_130 0.051005552 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002044_100 0.0556379948 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
5 Hb_031377_010 0.058819339 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
6 Hb_000510_250 0.0598278219 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
7 Hb_019053_040 0.060276022 - - cytochrome P450, putative [Ricinus communis]
8 Hb_007681_010 0.0610898256 - - hypothetical protein RCOM_2128750 [Ricinus communis]
9 Hb_105148_020 0.0646989896 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
10 Hb_000172_660 0.0659267136 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
11 Hb_000282_020 0.0686282534 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
12 Hb_001671_070 0.0707087528 - - kinase, putative [Ricinus communis]
13 Hb_005460_040 0.0738172107 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
14 Hb_000069_440 0.0763690427 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
15 Hb_023827_030 0.0769529924 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
16 Hb_011930_190 0.0771675547 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
17 Hb_002042_090 0.0792855676 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
18 Hb_003050_140 0.0842363072 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
19 Hb_002929_030 0.084601025 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
20 Hb_004411_010 0.0852801147 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]

Gene co-expression network

sample Hb_001166_010 Hb_001166_010 Hb_007853_030 Hb_007853_030 Hb_001166_010--Hb_007853_030 Hb_000144_130 Hb_000144_130 Hb_001166_010--Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_001166_010--Hb_002044_100 Hb_031377_010 Hb_031377_010 Hb_001166_010--Hb_031377_010 Hb_000510_250 Hb_000510_250 Hb_001166_010--Hb_000510_250 Hb_019053_040 Hb_019053_040 Hb_001166_010--Hb_019053_040 Hb_007681_010 Hb_007681_010 Hb_007853_030--Hb_007681_010 Hb_000069_220 Hb_000069_220 Hb_007853_030--Hb_000069_220 Hb_002042_090 Hb_002042_090 Hb_007853_030--Hb_002042_090 Hb_000069_440 Hb_000069_440 Hb_007853_030--Hb_000069_440 Hb_000172_660 Hb_000172_660 Hb_007853_030--Hb_000172_660 Hb_000144_130--Hb_002044_100 Hb_000144_130--Hb_000510_250 Hb_000144_130--Hb_031377_010 Hb_001671_070 Hb_001671_070 Hb_000144_130--Hb_001671_070 Hb_000130_340 Hb_000130_340 Hb_000144_130--Hb_000130_340 Hb_002044_100--Hb_000510_250 Hb_002044_100--Hb_031377_010 Hb_011930_190 Hb_011930_190 Hb_002044_100--Hb_011930_190 Hb_002044_100--Hb_007681_010 Hb_031377_010--Hb_001671_070 Hb_031377_010--Hb_000172_660 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_031377_010--Hb_000510_250 Hb_002259_120 Hb_002259_120 Hb_000510_250--Hb_002259_120 Hb_012675_040 Hb_012675_040 Hb_000510_250--Hb_012675_040 Hb_023582_010 Hb_023582_010 Hb_019053_040--Hb_023582_010 Hb_000282_020 Hb_000282_020 Hb_019053_040--Hb_000282_020 Hb_105148_020 Hb_105148_020 Hb_019053_040--Hb_105148_020 Hb_023827_030 Hb_023827_030 Hb_019053_040--Hb_023827_030 Hb_002066_100 Hb_002066_100 Hb_019053_040--Hb_002066_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.203451 8.22912 2.51962 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0356469 4.13082

CAGE analysis