Hb_002044_100

Information

Type -
Description -
Location Contig2044: 109767-111224
Sequence    

Annotation

kegg
ID rcu:RCOM_1211510
description hypothetical protein
nr
ID XP_012084102.1
description PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9P1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15036 PE=4 SV=1
Gene Ontology
ID GO:0009507
description duf2996 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21007: 109595-111234 , PASA_asmbl_21008: 109622-110984 , PASA_asmbl_21010: 112108-112630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002044_100 0.0 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
2 Hb_000144_130 0.0326643503 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000510_250 0.0483720915 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
4 Hb_031377_010 0.0511898177 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
5 Hb_001166_010 0.0556379948 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
6 Hb_011930_190 0.0600193512 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
7 Hb_007681_010 0.0630296354 - - hypothetical protein RCOM_2128750 [Ricinus communis]
8 Hb_001671_070 0.0671145544 - - kinase, putative [Ricinus communis]
9 Hb_007853_030 0.0692861998 - - structural molecule, putative [Ricinus communis]
10 Hb_000172_660 0.0702484135 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
11 Hb_002259_120 0.0774823516 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_003050_140 0.0779844917 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
13 Hb_001646_030 0.0798511301 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
14 Hb_000739_010 0.0808317443 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
15 Hb_012675_040 0.0812287192 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
16 Hb_000130_340 0.0827872399 - - -
17 Hb_105148_020 0.0834780457 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
18 Hb_000069_440 0.0878705339 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
19 Hb_001253_050 0.0883350472 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_007617_030 0.0897230301 - - hypothetical protein JCGZ_26801 [Jatropha curcas]

Gene co-expression network

sample Hb_002044_100 Hb_002044_100 Hb_000144_130 Hb_000144_130 Hb_002044_100--Hb_000144_130 Hb_000510_250 Hb_000510_250 Hb_002044_100--Hb_000510_250 Hb_031377_010 Hb_031377_010 Hb_002044_100--Hb_031377_010 Hb_001166_010 Hb_001166_010 Hb_002044_100--Hb_001166_010 Hb_011930_190 Hb_011930_190 Hb_002044_100--Hb_011930_190 Hb_007681_010 Hb_007681_010 Hb_002044_100--Hb_007681_010 Hb_000144_130--Hb_000510_250 Hb_000144_130--Hb_031377_010 Hb_001671_070 Hb_001671_070 Hb_000144_130--Hb_001671_070 Hb_000144_130--Hb_001166_010 Hb_000130_340 Hb_000130_340 Hb_000144_130--Hb_000130_340 Hb_000510_250--Hb_031377_010 Hb_002259_120 Hb_002259_120 Hb_000510_250--Hb_002259_120 Hb_000510_250--Hb_001166_010 Hb_012675_040 Hb_012675_040 Hb_000510_250--Hb_012675_040 Hb_031377_010--Hb_001671_070 Hb_000172_660 Hb_000172_660 Hb_031377_010--Hb_000172_660 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_007853_030 Hb_007853_030 Hb_001166_010--Hb_007853_030 Hb_001166_010--Hb_031377_010 Hb_019053_040 Hb_019053_040 Hb_001166_010--Hb_019053_040 Hb_011930_190--Hb_031377_010 Hb_011930_190--Hb_000144_130 Hb_011930_190--Hb_000172_660 Hb_003050_140 Hb_003050_140 Hb_011930_190--Hb_003050_140 Hb_011930_190--Hb_000510_250 Hb_007681_010--Hb_007853_030 Hb_001789_220 Hb_001789_220 Hb_007681_010--Hb_001789_220 Hb_041433_010 Hb_041433_010 Hb_007681_010--Hb_041433_010 Hb_007681_010--Hb_001166_010 Hb_007681_010--Hb_000144_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.725829 42.1477 14.2595 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130849 0.0514448 0 0 19.9769

CAGE analysis