Hb_001671_070

Information

Type -
Description -
Location Contig1671: 57342-60360
Sequence    

Annotation

kegg
ID rcu:RCOM_0716010
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002523302.1
description kinase, putative [Ricinus communis]
swissprot
ID Q6EU49
description Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1
trembl
ID B9SBD3
description Kinase, putative OS=Ricinus communis GN=RCOM_0716010 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable serine threonine-protein kinase wnk4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15429: 57839-58217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_070 0.0 - - kinase, putative [Ricinus communis]
2 Hb_031377_010 0.0476495632 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
3 Hb_000144_130 0.0487453575 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000160_260 0.0520849733 - - nutrient reservoir, putative [Ricinus communis]
5 Hb_000735_190 0.0581739396 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
6 Hb_032880_010 0.0634163641 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
7 Hb_000130_340 0.0636946066 - - -
8 Hb_000510_250 0.0663613108 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
9 Hb_002044_100 0.0671145544 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
10 Hb_006594_030 0.0684524624 - - -
11 Hb_000136_120 0.0692579697 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
12 Hb_001166_010 0.0707087528 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
13 Hb_000167_150 0.0723864763 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
14 Hb_000172_660 0.0730611104 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
15 Hb_006586_060 0.0755780254 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_007617_030 0.0767072573 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
17 Hb_001221_550 0.0780174586 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
18 Hb_001153_170 0.0808104493 - - PREDICTED: protein HOTHEAD [Populus euphratica]
19 Hb_003050_140 0.0812107317 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
20 Hb_002929_030 0.0820988327 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]

Gene co-expression network

sample Hb_001671_070 Hb_001671_070 Hb_031377_010 Hb_031377_010 Hb_001671_070--Hb_031377_010 Hb_000144_130 Hb_000144_130 Hb_001671_070--Hb_000144_130 Hb_000160_260 Hb_000160_260 Hb_001671_070--Hb_000160_260 Hb_000735_190 Hb_000735_190 Hb_001671_070--Hb_000735_190 Hb_032880_010 Hb_032880_010 Hb_001671_070--Hb_032880_010 Hb_000130_340 Hb_000130_340 Hb_001671_070--Hb_000130_340 Hb_031377_010--Hb_000144_130 Hb_000172_660 Hb_000172_660 Hb_031377_010--Hb_000172_660 Hb_002044_100 Hb_002044_100 Hb_031377_010--Hb_002044_100 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_000510_250 Hb_000510_250 Hb_031377_010--Hb_000510_250 Hb_000144_130--Hb_002044_100 Hb_000144_130--Hb_000510_250 Hb_001166_010 Hb_001166_010 Hb_000144_130--Hb_001166_010 Hb_000144_130--Hb_000130_340 Hb_000160_260--Hb_000735_190 Hb_006586_060 Hb_006586_060 Hb_000160_260--Hb_006586_060 Hb_000751_010 Hb_000751_010 Hb_000160_260--Hb_000751_010 Hb_102129_040 Hb_102129_040 Hb_000160_260--Hb_102129_040 Hb_031862_190 Hb_031862_190 Hb_000160_260--Hb_031862_190 Hb_000735_190--Hb_006586_060 Hb_000735_190--Hb_102129_040 Hb_003411_070 Hb_003411_070 Hb_000735_190--Hb_003411_070 Hb_000735_190--Hb_000751_010 Hb_000167_150 Hb_000167_150 Hb_000735_190--Hb_000167_150 Hb_032880_010--Hb_031377_010 Hb_032880_010--Hb_000172_660 Hb_002929_030 Hb_002929_030 Hb_032880_010--Hb_002929_030 Hb_001153_170 Hb_001153_170 Hb_032880_010--Hb_001153_170 Hb_004627_050 Hb_004627_050 Hb_032880_010--Hb_004627_050 Hb_002259_120 Hb_002259_120 Hb_000130_340--Hb_002259_120 Hb_000130_340--Hb_007617_030 Hb_006594_030 Hb_006594_030 Hb_000130_340--Hb_006594_030 Hb_001646_030 Hb_001646_030 Hb_000130_340--Hb_001646_030 Hb_000739_010 Hb_000739_010 Hb_000130_340--Hb_000739_010 Hb_000130_340--Hb_031377_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0119586 1.08098 0.266517 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.407469

CAGE analysis