Hb_000735_190

Information

Type -
Description -
Location Contig735: 214895-216289
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19340g
description POPTRDRAFT_762964; hypothetical protein
nr
ID XP_002309370.1
description hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
swissprot
ID Q43716
description Anthocyanidin 3-O-glucosyltransferase OS=Petunia hybrida GN=RT PE=2 SV=1
trembl
ID B9HBF7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s19340g PE=3 SV=1
Gene Ontology
ID GO:0047213
description udp rhamnose:anthocyanidin-3-glucoside partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56203: 214632-216379
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_190 0.0 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
2 Hb_000160_260 0.0416570078 - - nutrient reservoir, putative [Ricinus communis]
3 Hb_006586_060 0.046077078 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
4 Hb_102129_040 0.0507602083 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
5 Hb_003411_070 0.054488392 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
6 Hb_000751_010 0.0544997337 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000167_150 0.0551961425 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
8 Hb_000136_120 0.055263635 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
9 Hb_001671_070 0.0581739396 - - kinase, putative [Ricinus communis]
10 Hb_031862_190 0.0588616173 - - -
11 Hb_001329_060 0.0646177345 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_006594_030 0.068225744 - - -
13 Hb_001221_550 0.0699654789 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
14 Hb_001946_070 0.0725039269 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_009293_030 0.0777336643 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
16 Hb_102900_010 0.0823052077 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
17 Hb_000130_340 0.082322783 - - -
18 Hb_003592_040 0.0831266605 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
19 Hb_025048_050 0.0854678365 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
20 Hb_032880_010 0.0887530157 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]

Gene co-expression network

sample Hb_000735_190 Hb_000735_190 Hb_000160_260 Hb_000160_260 Hb_000735_190--Hb_000160_260 Hb_006586_060 Hb_006586_060 Hb_000735_190--Hb_006586_060 Hb_102129_040 Hb_102129_040 Hb_000735_190--Hb_102129_040 Hb_003411_070 Hb_003411_070 Hb_000735_190--Hb_003411_070 Hb_000751_010 Hb_000751_010 Hb_000735_190--Hb_000751_010 Hb_000167_150 Hb_000167_150 Hb_000735_190--Hb_000167_150 Hb_001671_070 Hb_001671_070 Hb_000160_260--Hb_001671_070 Hb_000160_260--Hb_006586_060 Hb_000160_260--Hb_000751_010 Hb_000160_260--Hb_102129_040 Hb_031862_190 Hb_031862_190 Hb_000160_260--Hb_031862_190 Hb_006586_060--Hb_102129_040 Hb_006586_060--Hb_000751_010 Hb_006586_060--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_006586_060--Hb_000136_120 Hb_001221_550 Hb_001221_550 Hb_006586_060--Hb_001221_550 Hb_102129_040--Hb_000751_010 Hb_102900_010 Hb_102900_010 Hb_102129_040--Hb_102900_010 Hb_001329_060 Hb_001329_060 Hb_102129_040--Hb_001329_060 Hb_102129_040--Hb_000167_150 Hb_003411_070--Hb_031862_190 Hb_003411_070--Hb_001329_060 Hb_003411_070--Hb_000751_010 Hb_001946_070 Hb_001946_070 Hb_003411_070--Hb_001946_070 Hb_009293_030 Hb_009293_030 Hb_003411_070--Hb_009293_030 Hb_000751_010--Hb_102900_010 Hb_000751_010--Hb_031862_190 Hb_000751_010--Hb_001329_060 Hb_000167_150--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_000167_150--Hb_006594_030 Hb_000167_150--Hb_001946_070 Hb_000167_150--Hb_001329_060 Hb_025048_050 Hb_025048_050 Hb_000167_150--Hb_025048_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.205187 55.5026 11.0808 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0500574 0.0640629 16.7731

CAGE analysis