Hb_025048_050

Information

Type -
Description -
Location Contig25048: 20174-21496
Sequence    

Annotation

kegg
ID rcu:RCOM_1514990
description Phytochrome kinase substrate, putative
nr
ID XP_012080254.1
description PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
swissprot
ID Q8GXS8
description Protein PHYTOCHROME KINASE SUBSTRATE 3 OS=Arabidopsis thaliana GN=PKS3 PE=2 SV=2
trembl
ID B9R994
description Phytochrome kinase substrate, putative OS=Ricinus communis GN=RCOM_1514990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025048_050 0.0 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
2 Hb_001946_070 0.0180767976 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
3 Hb_005357_210 0.0253812554 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
4 Hb_001329_060 0.0417813628 - - Polygalacturonase precursor, putative [Ricinus communis]
5 Hb_000167_150 0.049520647 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
6 Hb_000136_120 0.0497243535 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
7 Hb_000847_040 0.0562718939 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
8 Hb_000023_170 0.0625595773 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
9 Hb_006594_030 0.0629682773 - - -
10 Hb_003702_010 0.0629823515 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
11 Hb_089140_130 0.0631350999 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
12 Hb_002028_070 0.0645653124 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
13 Hb_009189_090 0.0653756862 - - protein phosphatase-2c, putative [Ricinus communis]
14 Hb_011316_080 0.0679195553 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_001153_170 0.0683324884 - - PREDICTED: protein HOTHEAD [Populus euphratica]
16 Hb_003411_070 0.0691291869 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
17 Hb_009293_030 0.0697711041 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
18 Hb_000243_360 0.0721507096 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
19 Hb_001033_080 0.072164847 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
20 Hb_009771_010 0.0769290987 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]

Gene co-expression network

sample Hb_025048_050 Hb_025048_050 Hb_001946_070 Hb_001946_070 Hb_025048_050--Hb_001946_070 Hb_005357_210 Hb_005357_210 Hb_025048_050--Hb_005357_210 Hb_001329_060 Hb_001329_060 Hb_025048_050--Hb_001329_060 Hb_000167_150 Hb_000167_150 Hb_025048_050--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_025048_050--Hb_000136_120 Hb_000847_040 Hb_000847_040 Hb_025048_050--Hb_000847_040 Hb_001946_070--Hb_001329_060 Hb_001946_070--Hb_005357_210 Hb_001946_070--Hb_000167_150 Hb_001946_070--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_001946_070--Hb_006594_030 Hb_000023_170 Hb_000023_170 Hb_005357_210--Hb_000023_170 Hb_009189_090 Hb_009189_090 Hb_005357_210--Hb_009189_090 Hb_003702_010 Hb_003702_010 Hb_005357_210--Hb_003702_010 Hb_005357_210--Hb_001329_060 Hb_003411_070 Hb_003411_070 Hb_001329_060--Hb_003411_070 Hb_001329_060--Hb_000167_150 Hb_102129_040 Hb_102129_040 Hb_001329_060--Hb_102129_040 Hb_000751_010 Hb_000751_010 Hb_001329_060--Hb_000751_010 Hb_000167_150--Hb_000136_120 Hb_000167_150--Hb_006594_030 Hb_006586_060 Hb_006586_060 Hb_000167_150--Hb_006586_060 Hb_000136_120--Hb_006594_030 Hb_001153_170 Hb_001153_170 Hb_000136_120--Hb_001153_170 Hb_089140_130 Hb_089140_130 Hb_000136_120--Hb_089140_130 Hb_011316_080 Hb_011316_080 Hb_000847_040--Hb_011316_080 Hb_002006_080 Hb_002006_080 Hb_000847_040--Hb_002006_080 Hb_000847_040--Hb_089140_130 Hb_000979_210 Hb_000979_210 Hb_000847_040--Hb_000979_210 Hb_000847_040--Hb_001153_170 Hb_009771_010 Hb_009771_010 Hb_000847_040--Hb_009771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.34004 0.287527 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.827917

CAGE analysis