Hb_005357_210

Information

Type transcription factor
Description TF Family: HB
Location Contig5357: 157639-161412
Sequence    

Annotation

kegg
ID rcu:RCOM_0905400
description homeobox protein, putative
nr
ID XP_012091395.1
description PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
swissprot
ID Q93V99
description Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1
trembl
ID A0A067JDG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21254 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein meristem l1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47563: 156506-157859 , PASA_asmbl_47564: 158073-160092 , PASA_asmbl_47565: 160257-161447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_210 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
2 Hb_025048_050 0.0253812554 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
3 Hb_001946_070 0.0374015851 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
4 Hb_000023_170 0.0434380581 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
5 Hb_009189_090 0.0454492921 - - protein phosphatase-2c, putative [Ricinus communis]
6 Hb_003702_010 0.0472429453 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
7 Hb_001329_060 0.0515390233 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_001033_080 0.0630712365 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
9 Hb_002028_070 0.0655197145 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
10 Hb_000847_040 0.0687762672 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
11 Hb_000136_120 0.0701956156 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
12 Hb_000167_150 0.0713693549 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
13 Hb_008032_010 0.0716231214 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_003411_070 0.073328428 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
15 Hb_009293_030 0.0739559615 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
16 Hb_132840_060 0.0744660311 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
17 Hb_000173_330 0.077035228 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
18 Hb_006355_100 0.0789171022 - - hypothetical protein glysoja_002455 [Glycine soja]
19 Hb_008195_100 0.0790657549 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
20 Hb_155874_020 0.0800677369 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase

Gene co-expression network

sample Hb_005357_210 Hb_005357_210 Hb_025048_050 Hb_025048_050 Hb_005357_210--Hb_025048_050 Hb_001946_070 Hb_001946_070 Hb_005357_210--Hb_001946_070 Hb_000023_170 Hb_000023_170 Hb_005357_210--Hb_000023_170 Hb_009189_090 Hb_009189_090 Hb_005357_210--Hb_009189_090 Hb_003702_010 Hb_003702_010 Hb_005357_210--Hb_003702_010 Hb_001329_060 Hb_001329_060 Hb_005357_210--Hb_001329_060 Hb_025048_050--Hb_001946_070 Hb_025048_050--Hb_001329_060 Hb_000167_150 Hb_000167_150 Hb_025048_050--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_025048_050--Hb_000136_120 Hb_000847_040 Hb_000847_040 Hb_025048_050--Hb_000847_040 Hb_001946_070--Hb_001329_060 Hb_001946_070--Hb_000167_150 Hb_001946_070--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_001946_070--Hb_006594_030 Hb_000023_170--Hb_009189_090 Hb_000023_170--Hb_003702_010 Hb_132840_060 Hb_132840_060 Hb_000023_170--Hb_132840_060 Hb_008032_010 Hb_008032_010 Hb_000023_170--Hb_008032_010 Hb_155874_020 Hb_155874_020 Hb_000023_170--Hb_155874_020 Hb_009189_090--Hb_008032_010 Hb_009189_090--Hb_132840_060 Hb_009189_090--Hb_003702_010 Hb_006355_100 Hb_006355_100 Hb_009189_090--Hb_006355_100 Hb_003702_010--Hb_155874_020 Hb_003702_010--Hb_132840_060 Hb_000853_340 Hb_000853_340 Hb_003702_010--Hb_000853_340 Hb_003411_070 Hb_003411_070 Hb_001329_060--Hb_003411_070 Hb_001329_060--Hb_000167_150 Hb_102129_040 Hb_102129_040 Hb_001329_060--Hb_102129_040 Hb_000751_010 Hb_000751_010 Hb_001329_060--Hb_000751_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 15.4944 1.57291 0 0.00736178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 5.22791

CAGE analysis