Hb_001946_070

Information

Type transcription factor
Description TF Family: ERF
Location Contig1946: 67706-68918
Sequence    

Annotation

kegg
ID rcu:RCOM_0224000
description DNA binding protein, putative
nr
ID XP_002524500.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9XI33
description Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1
trembl
ID B9SET1
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0224000 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor win1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19391: 67705-68896
cDNA
(Sanger)
(ID:Location)		 014_M22.ab1: 68754-68867 , 045_D01.ab1: 67740-68583

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_070 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_025048_050 0.0180767976 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
3 Hb_001329_060 0.0347129896 - - Polygalacturonase precursor, putative [Ricinus communis]
4 Hb_005357_210 0.0374015851 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
5 Hb_000167_150 0.0393561575 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
6 Hb_000136_120 0.0395094967 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
7 Hb_006594_030 0.0553539595 - - -
8 Hb_003411_070 0.0587441477 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
9 Hb_089140_130 0.0626448651 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
10 Hb_000847_040 0.0634093272 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
11 Hb_001153_170 0.0645308013 - - PREDICTED: protein HOTHEAD [Populus euphratica]
12 Hb_009293_030 0.0676585273 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
13 Hb_003702_010 0.0686230033 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
14 Hb_000243_360 0.0687836008 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
15 Hb_011316_080 0.0698378683 - - Cucumisin precursor, putative [Ricinus communis]
16 Hb_000023_170 0.0720140483 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
17 Hb_000735_190 0.0725039269 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
18 Hb_002028_070 0.073701305 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
19 Hb_102129_040 0.0742801874 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
20 Hb_009771_010 0.0747881969 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]

Gene co-expression network

sample Hb_001946_070 Hb_001946_070 Hb_025048_050 Hb_025048_050 Hb_001946_070--Hb_025048_050 Hb_001329_060 Hb_001329_060 Hb_001946_070--Hb_001329_060 Hb_005357_210 Hb_005357_210 Hb_001946_070--Hb_005357_210 Hb_000167_150 Hb_000167_150 Hb_001946_070--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_001946_070--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_001946_070--Hb_006594_030 Hb_025048_050--Hb_005357_210 Hb_025048_050--Hb_001329_060 Hb_025048_050--Hb_000167_150 Hb_025048_050--Hb_000136_120 Hb_000847_040 Hb_000847_040 Hb_025048_050--Hb_000847_040 Hb_003411_070 Hb_003411_070 Hb_001329_060--Hb_003411_070 Hb_001329_060--Hb_000167_150 Hb_102129_040 Hb_102129_040 Hb_001329_060--Hb_102129_040 Hb_000751_010 Hb_000751_010 Hb_001329_060--Hb_000751_010 Hb_000023_170 Hb_000023_170 Hb_005357_210--Hb_000023_170 Hb_009189_090 Hb_009189_090 Hb_005357_210--Hb_009189_090 Hb_003702_010 Hb_003702_010 Hb_005357_210--Hb_003702_010 Hb_005357_210--Hb_001329_060 Hb_000167_150--Hb_000136_120 Hb_000167_150--Hb_006594_030 Hb_006586_060 Hb_006586_060 Hb_000167_150--Hb_006586_060 Hb_000136_120--Hb_006594_030 Hb_001153_170 Hb_001153_170 Hb_000136_120--Hb_001153_170 Hb_089140_130 Hb_089140_130 Hb_000136_120--Hb_089140_130 Hb_006594_030--Hb_001153_170 Hb_006594_030--Hb_089140_130 Hb_009771_010 Hb_009771_010 Hb_006594_030--Hb_009771_010 Hb_007617_030 Hb_007617_030 Hb_006594_030--Hb_007617_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0327127 382.835 51.8829 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0707343 0.0654887 0 132.033

CAGE analysis