Hb_003411_070

Information

Type -
Description -
Location Contig3411: 117210-121652
Sequence    

Annotation

kegg
ID cic:CICLE_v10031055mg
description hypothetical protein
nr
ID XP_011008009.1
description PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
swissprot
ID Q9SX20
description Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thaliana GN=NPF3.1 PE=2 SV=1
trembl
ID A0A067JZU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18318 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35657: 117235-122118 , PASA_asmbl_35658: 118828-119333 , PASA_asmbl_35659: 119438-120561
cDNA
(Sanger)
(ID:Location)		 010_A15.ab1: 117235-118340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003411_070 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
2 Hb_031862_190 0.0413268443 - - -
3 Hb_001329_060 0.0457849585 - - Polygalacturonase precursor, putative [Ricinus communis]
4 Hb_000751_010 0.0532694666 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000735_190 0.054488392 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
6 Hb_001946_070 0.0587441477 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
7 Hb_009293_030 0.0608107419 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
8 Hb_102129_040 0.0613779357 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
9 Hb_006649_100 0.0655442774 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_000136_120 0.0687981113 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
11 Hb_000167_150 0.0691015563 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
12 Hb_025048_050 0.0691291869 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
13 Hb_006586_060 0.0707006991 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_005357_210 0.073328428 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
15 Hb_000187_100 0.0747846008 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_000160_260 0.07536426 - - nutrient reservoir, putative [Ricinus communis]
17 Hb_003702_010 0.0756299564 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
18 Hb_102900_010 0.0825623631 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
19 Hb_000173_330 0.0832369446 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
20 Hb_004223_120 0.0845060809 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003411_070 Hb_003411_070 Hb_031862_190 Hb_031862_190 Hb_003411_070--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_003411_070--Hb_001329_060 Hb_000751_010 Hb_000751_010 Hb_003411_070--Hb_000751_010 Hb_000735_190 Hb_000735_190 Hb_003411_070--Hb_000735_190 Hb_001946_070 Hb_001946_070 Hb_003411_070--Hb_001946_070 Hb_009293_030 Hb_009293_030 Hb_003411_070--Hb_009293_030 Hb_031862_190--Hb_000751_010 Hb_031862_190--Hb_000735_190 Hb_031862_190--Hb_001329_060 Hb_031862_190--Hb_009293_030 Hb_102129_040 Hb_102129_040 Hb_031862_190--Hb_102129_040 Hb_001329_060--Hb_001946_070 Hb_025048_050 Hb_025048_050 Hb_001329_060--Hb_025048_050 Hb_000167_150 Hb_000167_150 Hb_001329_060--Hb_000167_150 Hb_001329_060--Hb_102129_040 Hb_001329_060--Hb_000751_010 Hb_000751_010--Hb_102129_040 Hb_102900_010 Hb_102900_010 Hb_000751_010--Hb_102900_010 Hb_006586_060 Hb_006586_060 Hb_000751_010--Hb_006586_060 Hb_000160_260 Hb_000160_260 Hb_000735_190--Hb_000160_260 Hb_000735_190--Hb_006586_060 Hb_000735_190--Hb_102129_040 Hb_000735_190--Hb_000751_010 Hb_000735_190--Hb_000167_150 Hb_001946_070--Hb_025048_050 Hb_005357_210 Hb_005357_210 Hb_001946_070--Hb_005357_210 Hb_001946_070--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_001946_070--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_001946_070--Hb_006594_030 Hb_009846_010 Hb_009846_010 Hb_009293_030--Hb_009846_010 Hb_009293_030--Hb_001329_060 Hb_009293_030--Hb_001946_070 Hb_004223_120 Hb_004223_120 Hb_009293_030--Hb_004223_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0102407 0.148925 81.34 11.5307 0 0.0296457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0698354 0.036632 0.0694128 0.0874666 21.9293

CAGE analysis