Hb_000167_150

Information

Type -
Description -
Location Contig167: 160078-160398
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03590g
description hypothetical protein
nr
ID XP_006379540.1
description hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G7C2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s03590g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_150 0.0 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
2 Hb_000136_120 0.0142584506 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
3 Hb_006594_030 0.0250310854 - - -
4 Hb_001946_070 0.0393561575 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
5 Hb_001329_060 0.0460651874 - - Polygalacturonase precursor, putative [Ricinus communis]
6 Hb_006586_060 0.0478523899 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_025048_050 0.049520647 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
8 Hb_001153_170 0.0500353718 - - PREDICTED: protein HOTHEAD [Populus euphratica]
9 Hb_089140_130 0.0539366875 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
10 Hb_000735_190 0.0551961425 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
11 Hb_102129_040 0.0567012742 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
12 Hb_009771_010 0.061929963 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
13 Hb_000130_340 0.0654314596 - - -
14 Hb_011316_080 0.0682371256 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_003411_070 0.0691015563 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
16 Hb_000243_360 0.0706203167 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
17 Hb_000751_010 0.0707768008 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005357_210 0.0713693549 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
19 Hb_001671_070 0.0723864763 - - kinase, putative [Ricinus communis]
20 Hb_007617_030 0.0734213965 - - hypothetical protein JCGZ_26801 [Jatropha curcas]

Gene co-expression network

sample Hb_000167_150 Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_000167_150--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_000167_150--Hb_006594_030 Hb_001946_070 Hb_001946_070 Hb_000167_150--Hb_001946_070 Hb_001329_060 Hb_001329_060 Hb_000167_150--Hb_001329_060 Hb_006586_060 Hb_006586_060 Hb_000167_150--Hb_006586_060 Hb_025048_050 Hb_025048_050 Hb_000167_150--Hb_025048_050 Hb_000136_120--Hb_006594_030 Hb_000136_120--Hb_001946_070 Hb_001153_170 Hb_001153_170 Hb_000136_120--Hb_001153_170 Hb_000136_120--Hb_025048_050 Hb_089140_130 Hb_089140_130 Hb_000136_120--Hb_089140_130 Hb_006594_030--Hb_001153_170 Hb_006594_030--Hb_089140_130 Hb_009771_010 Hb_009771_010 Hb_006594_030--Hb_009771_010 Hb_007617_030 Hb_007617_030 Hb_006594_030--Hb_007617_030 Hb_001946_070--Hb_025048_050 Hb_001946_070--Hb_001329_060 Hb_005357_210 Hb_005357_210 Hb_001946_070--Hb_005357_210 Hb_001946_070--Hb_006594_030 Hb_001329_060--Hb_025048_050 Hb_003411_070 Hb_003411_070 Hb_001329_060--Hb_003411_070 Hb_102129_040 Hb_102129_040 Hb_001329_060--Hb_102129_040 Hb_000751_010 Hb_000751_010 Hb_001329_060--Hb_000751_010 Hb_006586_060--Hb_102129_040 Hb_006586_060--Hb_000751_010 Hb_000735_190 Hb_000735_190 Hb_006586_060--Hb_000735_190 Hb_006586_060--Hb_000136_120 Hb_001221_550 Hb_001221_550 Hb_006586_060--Hb_001221_550 Hb_025048_050--Hb_005357_210 Hb_000847_040 Hb_000847_040 Hb_025048_050--Hb_000847_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.24933 0.40886 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.800413

CAGE analysis