Hb_001329_060

Information

Type -
Description -
Location Contig1329: 43231-45195
Sequence    

Annotation

kegg
ID rcu:RCOM_1345110
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_002515219.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID Q949Z1
description Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1
trembl
ID B9RN80
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1345110 PE=3 SV=1
Gene Ontology
ID GO:0004650
description polygalacturonase at1g48100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09382: 44891-45026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_060 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
2 Hb_001946_070 0.0347129896 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
3 Hb_025048_050 0.0417813628 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
4 Hb_003411_070 0.0457849585 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
5 Hb_000167_150 0.0460651874 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
6 Hb_102129_040 0.0491333767 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
7 Hb_000751_010 0.0499902385 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000136_120 0.0508638981 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
9 Hb_005357_210 0.0515390233 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
10 Hb_006586_060 0.0581874543 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
11 Hb_031862_190 0.0611836323 - - -
12 Hb_003702_010 0.062459924 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
13 Hb_000735_190 0.0646177345 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
14 Hb_009293_030 0.067259666 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
15 Hb_006594_030 0.070330114 - - -
16 Hb_000023_170 0.0726969155 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
17 Hb_102900_010 0.0803608774 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
18 Hb_000187_100 0.0816884286 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
19 Hb_009189_090 0.0819322643 - - protein phosphatase-2c, putative [Ricinus communis]
20 Hb_000160_260 0.0819669657 - - nutrient reservoir, putative [Ricinus communis]

Gene co-expression network

sample Hb_001329_060 Hb_001329_060 Hb_001946_070 Hb_001946_070 Hb_001329_060--Hb_001946_070 Hb_025048_050 Hb_025048_050 Hb_001329_060--Hb_025048_050 Hb_003411_070 Hb_003411_070 Hb_001329_060--Hb_003411_070 Hb_000167_150 Hb_000167_150 Hb_001329_060--Hb_000167_150 Hb_102129_040 Hb_102129_040 Hb_001329_060--Hb_102129_040 Hb_000751_010 Hb_000751_010 Hb_001329_060--Hb_000751_010 Hb_001946_070--Hb_025048_050 Hb_005357_210 Hb_005357_210 Hb_001946_070--Hb_005357_210 Hb_001946_070--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_001946_070--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_001946_070--Hb_006594_030 Hb_025048_050--Hb_005357_210 Hb_025048_050--Hb_000167_150 Hb_025048_050--Hb_000136_120 Hb_000847_040 Hb_000847_040 Hb_025048_050--Hb_000847_040 Hb_031862_190 Hb_031862_190 Hb_003411_070--Hb_031862_190 Hb_003411_070--Hb_000751_010 Hb_000735_190 Hb_000735_190 Hb_003411_070--Hb_000735_190 Hb_003411_070--Hb_001946_070 Hb_009293_030 Hb_009293_030 Hb_003411_070--Hb_009293_030 Hb_000167_150--Hb_000136_120 Hb_000167_150--Hb_006594_030 Hb_006586_060 Hb_006586_060 Hb_000167_150--Hb_006586_060 Hb_102129_040--Hb_006586_060 Hb_102129_040--Hb_000751_010 Hb_102900_010 Hb_102900_010 Hb_102129_040--Hb_102900_010 Hb_102129_040--Hb_000735_190 Hb_102129_040--Hb_000167_150 Hb_000751_010--Hb_102900_010 Hb_000751_010--Hb_006586_060 Hb_000751_010--Hb_031862_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.6186 0.225698 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.46569

CAGE analysis