Hb_102129_040

Information

Type -
Description -
Location Contig102129: 43499-45799
Sequence    

Annotation

kegg
ID vvi:100243617
description serine/threonine-protein kinase CDL1-like
nr
ID XP_012081233.1
description PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9SX31
description Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1
trembl
ID F6I0T4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g03600 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01004: 43311-43902 , PASA_asmbl_01005: 43904-45182 , PASA_asmbl_01006: 45184-45883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102129_040 0.0 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
2 Hb_006586_060 0.0206655843 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
3 Hb_000751_010 0.024657581 - - conserved hypothetical protein [Ricinus communis]
4 Hb_102900_010 0.0442941216 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
5 Hb_001329_060 0.0491333767 - - Polygalacturonase precursor, putative [Ricinus communis]
6 Hb_000735_190 0.0507602083 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
7 Hb_000167_150 0.0567012742 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
8 Hb_000160_260 0.0608695423 - - nutrient reservoir, putative [Ricinus communis]
9 Hb_003411_070 0.0613779357 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
10 Hb_000136_120 0.0634845281 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
11 Hb_031862_190 0.0636461883 - - -
12 Hb_001221_550 0.071569808 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
13 Hb_001946_070 0.0742801874 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
14 Hb_010737_030 0.0770048926 - - unnamed protein product [Vitis vinifera]
15 Hb_006594_030 0.0777478703 - - -
16 Hb_000496_100 0.0824080117 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
17 Hb_008165_010 0.0829277478 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
18 Hb_000436_110 0.0834221071 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
19 Hb_025048_050 0.0857676218 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
20 Hb_003592_040 0.0892032173 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]

Gene co-expression network

sample Hb_102129_040 Hb_102129_040 Hb_006586_060 Hb_006586_060 Hb_102129_040--Hb_006586_060 Hb_000751_010 Hb_000751_010 Hb_102129_040--Hb_000751_010 Hb_102900_010 Hb_102900_010 Hb_102129_040--Hb_102900_010 Hb_001329_060 Hb_001329_060 Hb_102129_040--Hb_001329_060 Hb_000735_190 Hb_000735_190 Hb_102129_040--Hb_000735_190 Hb_000167_150 Hb_000167_150 Hb_102129_040--Hb_000167_150 Hb_006586_060--Hb_000751_010 Hb_006586_060--Hb_000735_190 Hb_006586_060--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_006586_060--Hb_000136_120 Hb_001221_550 Hb_001221_550 Hb_006586_060--Hb_001221_550 Hb_000751_010--Hb_102900_010 Hb_031862_190 Hb_031862_190 Hb_000751_010--Hb_031862_190 Hb_000751_010--Hb_001329_060 Hb_003411_070 Hb_003411_070 Hb_000751_010--Hb_003411_070 Hb_008165_010 Hb_008165_010 Hb_102900_010--Hb_008165_010 Hb_010737_030 Hb_010737_030 Hb_102900_010--Hb_010737_030 Hb_000436_110 Hb_000436_110 Hb_102900_010--Hb_000436_110 Hb_018663_010 Hb_018663_010 Hb_102900_010--Hb_018663_010 Hb_001946_070 Hb_001946_070 Hb_001329_060--Hb_001946_070 Hb_025048_050 Hb_025048_050 Hb_001329_060--Hb_025048_050 Hb_001329_060--Hb_003411_070 Hb_001329_060--Hb_000167_150 Hb_000160_260 Hb_000160_260 Hb_000735_190--Hb_000160_260 Hb_000735_190--Hb_003411_070 Hb_000735_190--Hb_000751_010 Hb_000735_190--Hb_000167_150 Hb_000167_150--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_000167_150--Hb_006594_030 Hb_000167_150--Hb_001946_070 Hb_000167_150--Hb_025048_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 17.438 3.33689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.49973

CAGE analysis